Site-wide links

College of Science

College of Science

ALL DEPARTMENTS

Select a Department from the list on the right to narrow results.

click to expandclick to closeGregory Babbitt

Gregory Babbitt

Assistant Professor
Thomas H. Gosnell School of Life Sciences
College of Science

2017 Submissions

Journal Paper

Ryen, E.G., et al. "Ecological Foraging Models as Inspiration for Optimized Recycling Systems in the Circular Economy." Resources, Conservation & Recycling. (2017): 1-10. Web. *

Babbitt, G.A., et al. "Triplet-Based Codon Organization Optimizes the Impact of Synonymous Mutation on Nucleic Acid Molecular Dynamics." Journal of Molecular Evolution. (2018): 1-12. Web. *

Published Game, Application or Software

Babbitt, G.A., et al. DROIDS 1.2 - Free Software Project for Comparative Protein Dynamics. Software. GitHub. 2017.

Peer Reviewed/Juried Poster Presentation

Babbitt, G.A. "Triplet Codon Organization Optimizes the Impact of Synonymous Mutation on Nucleic Acid Molecular Dynamics." Proceedings of the Society for Molecular Biology and Evolution. Ed. SMBE. Austin, TX: SMBE. £

View All Works ►

click to expandclick to closeNathaniel Barlow

Nathaniel Barlow

Assistant Professor
School of Mathematical Sciences
College of Science

2017 Submissions

Journal Paper

Barlow, Nathaniel S., et al. "On the Summation of Divergent, Truncated, and Underspecified Power Series via Asymptotic Approximants." Quarterly Journal of Mechanics and Applied Math 70. 1 (2017): 21-48. Print. *

View All Works ►

click to expandclick to closeMishkatul Bhattacharya

Mishkatul Bhattacharya

Assistant Professor
School of Physics and Astronomy
College of Science

2017 Submissions

Journal Paper

Bhattacharya, M., et al. "Effects of Photon Scattering Torque in Off-Axis Levitated Torsional Cavity Optomechanics." Journal of the Optical Society of America B 34. 6 (2017): C44-C51. Print. *

Kumar, P. and M. Bhattacharya. "Magnetometry via Spin-Mechanical Coupling in Levitated Optomechanics." Optics Express 25. 16 (2017): 19568-19582. Web. *

View All Works ►

click to expandclick to closeLarry Buckley

Larry Buckley

Associate Professor
Thomas H. Gosnell School of Life Sciences
College of Science

2017 Submissions

Journal Paper

Malone, Catherine L., Victor Hugo Reynoso, and Larry Buckley. "Never Judge an Iguana by Its Spines: Systematics of the Yucatan Spiny Tailed Iguana, Ctenosaura Defensor (Cope, 1866)." Molecular Phylogenetics and Evolution 115. (2017): 27-39. Print. *

Ali, Bazla, et al. "To Be or Not To Be T4: Evidence of a Complex Evolutionary Pathway of Head Structure and Assembly in Giant Salmonella Virus SPN3US." Frontiers in Microbiology 8. (2017): 1-21. Print. *

View All Works ►

click to expandclick to closeSandra Connelly

Sandra Connelly

Visiting Assistant Professor
Thomas H. Gosnell School of Life Sciences
College of Science

2017 Submissions

Journal Paper

Connelly, Sandra J., Katilin Meier, and Madeline Becker. "Inquiry and Investigations: Salamander antipredator defenses: A field exercise to engage students in ecosystem dynamics." The American Biology Teacher 79. 7 (2017): 564-570. Print. *

Lynn, Matthew, et al. "Deaf, Hard-of-Hearing, and Hearing Students in an Introductory Biology Course: College Readiness, Social Learning Styles, and Success." Journal of Developmental and Physical Disabilities 29. 1 (2017): 173-201. Print. *

View All Works ►

click to expandclick to closeMichael Cromer

Michael Cromer

Assistant Professor
School of Mathematical Sciences
College of Science

2017 Submissions

Journal Paper

Cromer, Michael, Glenn H. Fredrickson, and L. Gary Leal. "Concentration Fluctuations in Polymer Solutions Under Mixed Flow." Journal of Rheology 6. 14 (2017): 711-730. Print. £

Kalb, Arthur, et al. "Role of Chain Scission in Cross-Slot Flow of Wormlike Micellar Solutions." Physical Review Fluids 2. (2017): 1-10. Print. £

View All Works ►

click to expandclick to closeFeng Cui

Feng Cui

Assistant Professor
Thomas H. Gosnell School of Life Sciences
College of Science

2017 Submissions

Journal Paper

F., Bao, et al. "P53 Binding Sites in Normal and Cancer Cells are Characterized by Distinct Chromatin Context." Cell Cycle 16. 21 (2017): 2073-2085. Print. *

View All Works ►

click to expandclick to closeIrene Evans

Irene Evans

Professor
Thomas H. Gosnell School of Life Sciences
College of Science

2017 Submissions

Journal Paper

Evans, Irene M. "Breast Cancer Targeting Peptide: A New Method To Deliver Imaging Agents For Breast Cancer Detection?" World Molecular Imaging Congress. (2017): 1-10. Web. *

Evans, Irene M., et al. "A New Targeting Agent that Specifically Binds to Breast Cancer Cells?" Molecular Biology of the Cell 28. (2017): 1-10. Print. £

Peer Reviewed/Juried Poster Presentation

Evans, Irene M., et al. "Penetrability of Prostate Tumor Cells Grown in 3D Culture by Prostate Targeting Agents." Proceedings of the American Society for Cell Biology. Ed. ASCB. Philadelphia, PA: ASCB. £

Evans, Irene M., et al. "Internalization and Uptake of Targeted Molecular Imaging Agents (TMIAs) Through Clathrin-Mediated Endocytosis." Proceedings of the American Society for Cell Biology. Ed. ASCB. Philadelphia, PA: ASCB. £

Evans, Irene M., et al. "Dilution of Matrigel Matrix Affects the Formation of 3D Spheroids in Lung and Prostate Cancer Cell Lines." Proceedings of the Rochester Academy of Science. Ed. Rochester Academy of Science. Rochester, NY: Rochester Academy of Science. £

Evans, Irene M., et al. "Mycoplasma Testing by Polymerase Chain Reaction." Proceedings of the Rochester Academy of Science. Ed. Rochester Academy of Science. Rochester, NY: Rochester Academy of Science. £

View All Works ►

click to expandclick to closeMark Fairchild

Mark Fairchild

Professor
Color Science
College of Science

2017 Submissions

Journal Paper

Murdoch, M.J. and M.D. Fairchild. "Modeling the Effects of Inter-Observer Variation on Color Rendition." Lighting Research and Technology 49. (2017): 1-18. Print. *

Amiri, M.M. and M.D. Fairchild. "Use of Spectral Sensitivity Variability in Reflectance Recovery from Colorimetric Information." Journal of the Optical Society of America A 34. (2017): 1224-1235. Print. *

Published Conference Proceedings

Zhou, Zhen, et al. "Observer Calibrator for Color Vision Research." Proceedings of the IS&T Electronic Imaging 2017 Conference. Ed. IS&T. San Francisco, CA: IS&T, 2017. Print. *

Invited Paper

Fairchild, M.D. "Individual Differences in Color Matching & Adaptation and Illumination." OSA Fall Vision Meeting. (2017). Web. ∆

Fairchild, M.D. "Color Perception: Contexts and Individuals." American Glass Guild Proceedings. (2017). Print. ∆

View All Works ►

click to expandclick to closeSusan Farnand

Susan Farnand

Visiting Assistant Professor
Color Science
College of Science

2017 Submissions

Published Conference Proceedings

Farnand, Susan, et al. "A Methodology for Perceptual Image Quality Assessment of Smartphone Cameras – Color Quality." Proceedings of the IS&T’s Electronic Imaging Symposium: Image Quality and Systems Performance XIV, February 2017, San Francisco. Ed. IS&T. San Francisco, CA: IS&T, 2017. Web. *

Hassani, Nargess and Susan Farnand. "Color Discrimination Threshold for Medical Test Devices." Proceedings of the Electronic Imaging Symposium: Color Imaging XXII conference February 2017, San Francisco. Ed. IS&T. San Francisco, CA: IS&T, 2017. Web. *

Farnand, Susan. "Evaluating Perceived Capture Quality for the Digitization of Cultural Heritage Objects." Proceedings of the Archiving Conference, Riga, Latvia. Ed. IS&T. Washington, DC: IS&T, 2017. Web. *

Sheth, Gaurav, Katherine Carpenter, and Susan Farnand. "Image Quality Assessment of Displayed and Printed Smartphone Images." Proceedings of the Color and Imaging Conference, Lillehammer, Norway. Ed. IS&T. Washington, DC: IS&T, 2017. Web. *

Invited Article/Publication

Carpenter, Katherine and Susan Farnand. "A Validation Study of a Perceptually-Based Metric of Smartphone Image Quality." IEEE Standards Education. (2017). Web. ∆

View All Works ►

click to expandclick to closeElizabeth Hane

Elizabeth Hane

Associate Professor
Thomas H. Gosnell School of Life Sciences
College of Science

2017 Submissions

Published Conference Proceedings

Matheson, Amanda, et al. "Guided and Unguided Student Reflections." Proceedings of the Physics Education Research Conference. Ed. H. Vincent Kuo. Cincinnati, Ohio: PER-Central, 2017. Print. *

Hane, Elizabeth and Karl Korfmacher. "From Rochester to Malmo: An International Cross-Institutional Study Abroad Course." Proceedings of the Ecological Society of America. Ed. ESA Editorial Board. Portland, Oregon: Ecological Society of America, 2017. Web. £

Hane, Elizabeth and Evelyn Brister. "An Intervention to Reduce Confirmation Bias in First-Year STEM Students." Proceedings of the AAC&U STEM Education Conference. Ed. AAC&U. San Francisco, CA: AAC&U, 2017. Web. «

View All Works ►

click to expandclick to closeAndre Hudson

Andre Hudson

Associate Professor
Thomas H. Gosnell School of Life Sciences
College of Science

2017 Submissions

Journal Paper

Hudson, Andre O, et al. "Dihydrodipicolinate Synthase: Structure, Dynamics, Function, and Evolution." Macromolecular Protein Complexes. (2017): 271-289. Print. *

Gan, Han M, et al. "Whole Genome Sequencing of Rhodotorula mucilaginosa Isolated from the Chewing Stick (Distemonanthus benthamianus): Insights into Rhodotorula Phylogeny, Mitogenome Dynamics and Carotenoid Biosynthesis." PeerJ. (2017): 1-18. Web. *

Kumar, HKS, et al. "Genomic Characterization of Eight Ensifer Strain Isolated from Pristine Caves and a Whole Genome Phylogeny of Ensifer (Sinorhizobium)." Journal of Genomics 5. (2017): 12-17. Print. £

Gan, Han M, et al. "Whole Genome of Salmonella enterica subsp. enterica Serovar Typhimurium Strains TT6675 and TT9097 Employed in the Isolation and Characterization of a Novel Giant Phage Mutant Collection." Genome Announcements 5. 34 (2017): 1-2. Web. £

Book Chapter

Hudson, Andre O, et al. "Lysine Synthesis in Microorganisms." The Handbook of Microbial Metabolism of Amino Acids. Edinburgh, UK: CAB International, 2017. 49-69. Print. £

View All Works ►

click to expandclick to closeBaasansuren Jadamba

Baasansuren Jadamba

Assistant Professor
School of Mathematical Sciences
College of Science

2017 Submissions

Journal Paper

Causa, Antonio, Baasansuren Jadamba, and Fabio Raciti. "A migration Equilibrium Model with Uncertain Data and Movement Costs." Decisions in Economics and Finance 40. 1-2 (2017): 159-175. Print. *

Jadamba, Baasansuren, et al. "On Convex Modified Output Least-Squares for Elliptic Inverse Problems: Stability, Regularization, Applications, and Numerics." Optimization 60. (2017): 983-1012. Print. *

Jadamba, Baasansuren, et al. "First-Order and Second-Order Adjoint Methods for Parameter Identification Problems with an Application to the Elasticity Imaging Inverse Problem." Inverse Problems in Science and Engineering 25. 12 (2017): 1-21. Print. *

Gwinner, Joachim, et al. "Identification in Variational and Quasi-Variational Inequalities." J. Convex Analysis 25. 1-26 (2018): 545-569. Print. *

Jadamba, Baasansuren, Massimo Pappalardo, and Fabio Raciti. "Efficiency and Vulnerability Analysis for Congested Networks with Random Data." J. Optim. Theory Appl.. (2018): 1-21. Web. *

Book Chapter

Cho, Manki, et al. "First-Order and Second-Order Adjoint Methods for the Inverse Problem of Identifying Nonlinear Parameters in PDEs." Industrial Mathematics and Complex Systems. New York, NY: Springer, 2017. 147-163. Print. *

Published Conference Proceedings

Jadamba, Baasansuren and Fabio Raciti. "A Variational Inequality Formulation of a Migration Model with Random Data." Proceedings of the Modeling and Optimization: Theory and Applications. Ed. Martin Takac, Tamas Terlaky. New York, NY: Springer, 2017. Print. £

Cho, Manki, et al. "Identification in Mixed Variational Problems by Adjoint Methods with Applications." Proceedings of the Modeling and Optimization: Theory and Applications. Ed. Martin Takac, Tamas Terlaky. New York, NY: Springer, 2017. Print. £

Invited Keynote/Presentation

Jadamba, Baasansuren. "Minimization of a principal eigenvalue in a mixed dispersal model." Canadian Mathematical Society Winter Meeting. Canadian Mathematical Society. Niagara Falls, Ontario. 3 Nov. 2016. Conference Presentation.

Jadamba, Baasansuren. "First- and second-order adjoint method for parameter identification." Modeling and Optimization: Theory and Applications (MOPTA). Lehigh University. Bethlehem, PA. 17 Aug. 2016. Conference Presentation.

Jadamba, Baasansuren. "Nonlinear Parameter Identification in Variational Problems." 11th AIMS Conference on Dynamical Systems, Differential Equations. American Institute of Mathematical Sciences. Orlando, FL. 3 Jul. 2016. Conference Presentation.

Jadamba, Baasansuren. "Non-smooth Optimization Framework for Elastography Inverse Problem of Tumor Identification." SIAM Conference on Optimization. Society for Industrial and Applied Mathematics. Vancouver, BC. 24 May 2017. Conference Presentation.

Jadamba, Baasansuren. "Mixed Dispersal Model of Population Dynamics." Department of Mathematics and its Applications Colloquium. UNED. Madrid, Spain, Madrid. 4 Jul. 2017. Guest Lecture.

Jadamba, Baasansuren. "Study of a Mixed Dispersal Model of Population Dynamics." Institute of Mathematics Colloquium. Martin-Luther University of Halle-Wittenberg. Halle, Germany, Sachsen-Anhalt. 22 Jun. 2017. Guest Lecture.

View All Works ►

click to expandclick to closeKarl Korfmacher

Karl Korfmacher

Professor
Thomas H. Gosnell School of Life Sciences
College of Science

2017 Submissions

Journal Paper

Hellman, Kelly, et al. "Estimating the Economic Impact of Stormwater Runoff in the Allen Creek Watershed." Ecological Economics 145. (2018): 420-429. Web. «

View All Works ►

click to expandclick to closeM Kotlarchyk

M Kotlarchyk

Professor
School of Physics and Astronomy
College of Science

2017 Submissions

Journal Paper

Kotlarchyk, Michael and George M. Thurston. "A Framework for Modeling Polarized Neutron Scattering from NMR Spin-Modulated Systems." Journal of Physics: Conference Series 862. (2017): 1-11. Print. *

View All Works ►

click to expandclick to closeMatt Miri

Matt Miri

Associate Professor
School of Chemistry and Materials Science
College of Science

2017 Submissions

Journal Paper

Miri, Massoud J., et al. "Eugenol as Renewable Comonomer Compared to 4-Penten-1-OL in Ethylene Copolymerization using a palladium Aryl Sulfonate Catalyst." Polymer (Elsevier). (2017): 319-328. Print. «

View All Works ►

click to expandclick to closeMichael Murdoch

Michael Murdoch

Assistant Professor
Color Science
College of Science

2017 Submissions

Journal Paper

Murdoch, Michael J. "Characterization and Control of a Multi-Primary LED Light Lab." Optics Express 25. 24 (2017): 29605-29616. Web. *

Murdoch, Michael J. and Mark D. Fairchild. "Modelling the Effects of Inter-Observer Variation on Colour Rendition." Lighting Research & Technology. (2017): 1-18. Print. *

View All Works ►

click to expandclick to closeDavid Ross

David Ross

Professor
School of Mathematical Sciences
College of Science

2017 Submissions

Journal Paper

Ross, David S., Khamir Mehta, and Antonio Cabal. "Mathematical Model of Bone Remodeling Captures the Antiresorptive and Anabolic Actions of Various Therapies." Bulletin of Mathematical Biology 79. 1 (2017): 117-142. Print. £

Wahle, C.W., et al. "Model for Screened, Charge-Regulated Electrostatics of an Eye Lens Protein: Bovine GammaB-Crystallin." Physical Review E 96. 3 (2017): 1-25. Print. £

Bell, Michael M., et al. "Statistical-Thermodynamic Model for Light Scattering from Eye Lens Protein Mixtures." Journal of Chemical Physics 146. (2017): 1-32. Print. £

View All Works ►

click to expandclick to closeGary Skuse

Gary Skuse

Professor
Thomas H. Gosnell School of Life Sciences
College of Science

2017 Submissions

Book Chapter

Skuse, Gary R., et al. "Computer Science and the Liberal Arts: Hidden Synergies and Boundless Opportunities." New Directions for Computing Education: Embedding Computing Across Disciplines. Ed. Samuel B. Fee, Amanda M. Holland-Minkley, and Thomas E. Lombardy. Cham, Switzerland: Springer Nature, 2017. 45-62. Print. ∆

Invited Paper

Ferran, Maureen C. and Gary R. Skuse. "Evasion of Host Innate Immunity by Emerging Viruses: Antagonizind Host RIG-I Pathways." Journal of Emerging Diseases and Virology. (2017). Web. *

Journal Editor

Skuse, Gary R., ed. Journal of Emerging Diseases and Virology. Milpitas: Sci Forschen Inc., 2017. Web. *

View All Works ►

click to expandclick to closeSusan Smith

Susan Smith

Associate Professor
Thomas H. Gosnell School of Life Sciences
College of Science

2017 Submissions

Journal Paper

Oberkircher, Meghan C. and Susan Smith Pagano. "Seasonal Variation in Chronic Stress and Energetic Condition in Gray Catbirds (Dumetella carolinensis) and Song Sparrows (Melospiza melodia)." Auk:Ornithological Advances 135. (2017): 83-90. Web. *

Journal Editor

Pagano, Susan Smith, ed. Condor: Ornithological Applications. Chicago, IL: American Ornithological Society, 2017. Print.

Invited Keynote/Presentation

Pagano, Susan Smith, et al. "Characterization of Antioxidant Components in Wild Fruits Consumed by Migratory Birds Using Multidimensional Fluorescence Spectroscopy and Chemometrics." Wilson Ornithological Society Annual Meeting. Wilson Ornithological Society. Ft. Myers, FL. 10 Mar. 2017. Conference Presentation.

Pagano, Susan Smith and Calvin P. Carrington. "A Multi-Year Physiological Study of Catharus Thrush Migration at Braddock Bay Bird Observatory." Wilson Ornithological Society Annual Meeting. Wilson Ornithological Society. Ft. Myers, FL. 10 Mar. 2017. Conference Presentation.

Frawley, Abigail, et al. "A Comparison of Native and Non-Native Fruit Nutrition for Birds in the Northeast." Eastern Bird Banding Association Annual Meeting. Eastern Bird Banding Association. Ithaca, NY. 25 Mar. 2017. Conference Presentation.

Swerzenski, Kristen, et al. "Does the Early Bird Get the Worm? An Examination of Chronic Stress and Plasma Metabolite Profiles in Fall Thrush Migrants." Eastern Bird Banding Association Annual Meeting. Eastern Bird Banding Association. Ithaca, NY. 25 Mar. 2017. Conference Presentation.

Pagano, Susan Smith, et al. "An Integrated Investigation of Thrush Stopover Biology on the South Shore of Lake Ontario." 17th Northeast Natural History Conference. Eagle Hill Institute. Cromwell, CT. 22 Apr. 2017. Conference Presentation.

Frawley, Abigail, et al. "Impact of Japanese Barberry on the Physiological Condition of Breeding Ovenbirds." 44th Annual Rochester Academy of Sciences Fall Scientific Paper Session. Rochester Academy of Science. Rochester, NY. 11 Nov. 2017. Conference Presentation.

Border, Molly, Gretchen Horst, and Susan Smith Pagano. "A Nutritional Exploration of Common Buckthorn Fruit and the Value for Migratory Birds." 44th Annual Rochester Academy of Sciences Fall Scientific Paper Session. Rochester Academy of Science. Rochester, NY. 11 Nov. 2017. Conference Presentation.

Pagano, Susan Smith. "Buckthorn in the New world: A Biochemical Exploration of Naturalized and Native Fruits as They Relate to Bird Migration." Invited presentation. Lund University. Lund, Sweden. 21 Sep. 2017. Lecture.

Pagano, Susan Smith. "Native Birds and Exotic Fruits: Nutritional and Physiological Links to Migrant Fueling." EEB Seminar Series. Univeristy at Buffalo. Buffalo, NY. 6 Dec. 2017. Lecture.

View All Works ►

click to expandclick to closeLeslie Kate Wright

Leslie Kate Wright

Associate Professor
Thomas H. Gosnell School of Life Sciences
College of Science

2017 Submissions

Journal Paper

Wright, L. Kate, Christina M. Catavero, and Dina L. Newman. "The DNA Triangle and Its Application to Learning Meiosis." CBE Life Sciences Education 16. 3 (2017): 1-14. Print. *

Newman, Dina L. and L. Kate Wright. "Meiosis: A Play in Three Acts, Starring DNA Sequence." CourseSource 4. (2017): 1-9. Print. *

Wright, L. Kate, et al. "Arrows in Biology: Lack of Clarity and Consistency Points to Confusion for Learners." CBE Life Sciences Education. (2017): 1-13. Print. *

Invited Keynote/Presentation

Wright, L. Kate and Dina L. Newman. "Interactive Video Vignettes: Out-of-Class Priming Tools to Improve Student Learning of Biology Core Concepts." 24th Annual American Society for Microbiology Conference for Undergraduate Educators. 24th Annual American Society for Microbiology Conference for Undergraduate Educators. Denver, CO. 28 Jul. 2017. Conference Presentation. *

Newman, Dina L. and L. Kate Wright. "Lack of Grounding in Molecular Understanding is a Barrier to Conceptual Understanding of Genetic Terminology." 7th Annual Meeting of the Society for the Advancement of Biology Education Research. Society for the Advancement of Biology Education Research. Minneapolis, MN. 22 Jul. 2017. Conference Presentation. «

Peer Reviewed/Juried Poster Presentation

Newman, Dina L., L. Kate Wright, and Jean A. Cardinale. "An Interactive Video Vignette Successfully Teaches Pedigree Analysis to Undergraduates." Proceedings of the American Society of Human Genetics. Ed. American Society of Human Genetics. Orlanda, FL: American Society of Human Genetics. *

Stefkovich, Meghan, et al. "3-D Physical Model-based Activities Benefit Student Learning in Multiple Ways." Proceedings of the 7th Annual Meeting of the Society for the Advancement of Biology Education Research (SABER). Ed. SABER. Minneapolis, MN: SABER. *

Wright, L. Kate and Dina L. Newman. "Exploration of the DNA Triangle and its Application to Learning Molecular Biology." Proceedings of the 7th Annual Meeting of the Society for the Advancement of Biology Education Research (SABER). Ed. SABER. Minneapolis, MN: SABER. *

Newman, Dina L. and L. Kate Wright. "Supporting Inclusivity and Improving Learning with Activities that Incorporate Physical Models of Molecular Biology Processes." Proceedings of the Gordon Research Conference on Undergraduate Biology Education Research. Ed. Susan Elrod. Easton, MA: Gordon Research Conference. *

Cardinale, Jean, Dina L. Newman, and Kate L. Wright. "Interactive Video Vignettes: Out-of-class Primers that Allow Personalized Active Learning for all Students." Proceedings of the Gordon Research Conference on Undergraduate Biology Education Research. Ed. Susan Elrod. Easton, MA: Gordon Research Conference. *

View All Works ►