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B. Thomas Golisano College of Computing & Information Sciences

B. Thomas Golisano College of Computing & Information Sciences

PHD PROGRAM

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click to expandclick to closeJustin Domke

Justin Domke

Assistant Professor
PhD Program
B. Thomas Golisano College of Computing & Information Sciences

2012 Submissions

Journal Paper

Domke, Justin. "Generic Methods for Optimization-Based Modeling." Artificial Intelligence and Statistics 22. (2012): 318-326. Web. * « £

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click to expandclick to closeFei Gao

Fei Gao

PhD Program
B. Thomas Golisano College of Computing & Information Sciences

2012 Submissions

Journal Paper

Liu, Huafeng, et al. "Robust Framework for PET Image Reconstruction Incorporating System and Measurement Uncertainties." PLos ONE 7. 3 (2012): 32224. Print. *

Published Conference Proceedings

Gao, Fei, Huafeng Liu, and Pengcheng Shi. "Patient-Adaptive Lesion Metabolism Analysis by Dynamic PET Images." Proceedings of the Medical Image Computing and Computer Assisted Intervention (MICCAI), Nice, France, October, 2012. Ed. Nicholas Ayache, Herve Delingette, and Polina Golland. Heidelberg, Germany: Springer, Print. «

Xu, Jingjia, et al. "Localization of Sparse Transmural Excitation Stimuli from Surface Mapping." Proceedings of the Medical Image Computing and Computer Assisted Intervention (MICCAI), Nice, France, October, 2012. Ed. Nicholas Ayache, Herve Delingette, and Polina Golland. Heidelberg, Germany: Springer, Print. «

Gao, Fei, Huafeng Liu, and Pengcheng Shi. "Quantitative Analysis of Drug Metabolism by Dynamic PET Imaging without Blood Sampling." Proceedings of the Annual Meeting of Society of Nuclear Medicine, Miami, FL, June, 2012. Ed. Journal of Nuclear Medicine, Meeting Abstracts. Reston, VA: Society of Nuclear Medicine, Print. *

Gao, Fei, Huafeng Liu, and Pengcheng Shi. "Improving Lesion Detectability with Disturbed Blood Sampling by an Adaptive Model." Proceedings of the 98th Scientific Assembly and Annual Meeting of Radiological Society of North America. Ed. Radiological Society of North America. Chicago, IL: Radiological Society of North America, 2012. Web. *

Invited Presentations/Keynotes

Gao, Fei and Pengcheng Shi. "Computational Image Analysis of Molecular Imaging." Tutorial on Modeling and Analysis of Molecular Imaging. Medical Image Computing and Computer Assisted Intervention (MICCAI). Nice, France. 6 Oct. 2012. Lecture. ∆

Gao, Fei and Kuangyu Shi. "Introduction to Clinical and Biological Applications." Tutorial on Modeling and Analysis of Molecular Imaging. Medical Image Computing and Computer Assisted Intervention (MICCAI). Nice, France. 6 Oct. 2012. Lecture. ∆

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click to expandclick to closeAnne Haake

Anne Haake

Professor
PhD Program
B. Thomas Golisano College of Computing & Information Sciences

2012 Submissions

Published Conference Proceedings

Womack, Kathryn, et al. "Disfluencies as Extra-propositional Indicators of Cognitive Processing." Proceedings of the ExProM '12: Proceedings of Workshop on Extra-propositional Aspect of Meaning in Computational Linguistics; 50th Ann. Meeting of the Assoc. for Computational Linguistics,2012, Korea. Ed. Association for Computational Linguistics. Stroudsburg, PA: Association for Computational Linguistics, Web. «

McCoy, Wilson, et al. "Annotation Schemes to Encode Domain Knowledge in Medical Narratives." Proceedings of the Proceedings of the 6th Linguistic Annotation Workshop at the 50th Annual Meeting of the Assoc. for Computational Linguistics 2012, Jeju, Korea. Ed. Association for Computational Linguistics. Stroudsburg, PA: Association for Computational Linguistics, 2012. Web. «

McCoy, Wilson, et al. "A Linking Uncertainty in Physicians? Narratives to Diagnostic Correctness." Proceedings of the Proceedings of the Workshop on Extra-propositional Aspect of Meaning in Computational linguistics at the 50th Annual Meeting of the Assoc. for Computational Linguistics 2012, Jeju, Korea. Ed. Association for Computational Linguistics. Stroudsburg, PA: Association for Computational Linguistics, 2012. Web. «

Li, Rui, et al. "Learning Eye Movement Patterns for Characterization of Perceptual Expertise." Proceedings of the Eye Tracking Research and Application (ETRA12). Ed. Association for Computing Machinery, Inc. New York, NY: Association for Computing Machinery, Inc., 2012. Web. «

Li, Rui, et al. "Learning Image-Derived Eye Movement Patterns for Characterization of Perceptual Expertise." Proceedings of the Proceedings of The Annual Meeting of the Cognitive Science Society CogSci12 Sapporo, Japan. Ed. Naomi Miyake, David Peebles and Richard P. Cooper. Austin, TX: Cognitive Science Society, 2012. Web. «

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click to expandclick to closeWei Le

Wei Le

Assistant Professor
PhD Program
B. Thomas Golisano College of Computing & Information Sciences

2012 Submissions

Published Conference Proceedings

Le, Wei. "Segmented Symbolic Analysis." Proceedings of the International Conference for Software Engineering. Ed. Betty Chen. San Francisco, CA: n.p., Web. *

Invited Presentations/Keynotes

Le, Wei. "A Practical, Path-Based Framework for Detecting and Diagnosing Software Faults." Invited Talk @ Gramma Tech. Gramma Tech. Ithaca, NY. 5 Jun. 2012. Guest Lecture.

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click to expandclick to closeHuafeng Liu

Huafeng Liu

Associate Professor
PhD Program
B. Thomas Golisano College of Computing & Information Sciences

2012 Submissions

Journal Paper

Liu, Huafeng and Hongjie Hu, A. Sinusas, Pengcheng Shi. "An H Approach for Elasticity Properties Reconstruction." Medical Physics 39. 1 (2012): 475-482. Print. ˜

Yu, Fengchao and Huafeng Liu, Zhenghui Hu and Pengcheng Shi. "GPU Accelerated Particle Filter Framework for PET Image Reconstruction." Journal of the Optical Society of America A. 29. 4 (2012): 637-643. Print. ˜

Liu, Huafeng and S Wang, F Gao, Y Tian, Wufan Chen,Zhenghui Hu, Pengcheng Shi. "Robust Framework for PET Image Reconstruction Incorporating System and Measurement Uncertainties." PloS ONE. (2012): 32224. Web. ˜

Hu, Z and H Liu, P Shi. "Concurrent Bias Correction in Hemodynamic Data Assimilation." Medical Image Analysis 16. 7 (2012): 1456-1464. Print. ˜

Hu, Zhenghui and Cong Liu, Pengcheng Shi, Huafeng Liu. "Exploiting Magnetic Resonance Angiography Imaging Improves Model Estimation of BOLD Signal." PLoS ONE 7. 2 (2012): e31612. Web. ˜

Hu, Zhenghui and Pengyu Ni, Cong Liu, Xiaohu Zhao, Huafeng Liu and Pengcheng Shi. "Quantitative Evaluation of Activation State in Functional Brain Imaging." Brain Topography 25. 4 (2012): 362-373. Print. ˜

Published Conference Proceedings

Yu, Fengchao, Huafeng Liu, and Pengcheng Shi. "PET Image Reconstruction Based on Particle Filter Framework." Proceedings of the IEEE Biomedical and Health Informatics. Ed. IEEE. Shenzhen, Guangdong: n.p., 2012. Print. « ∆

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click to expandclick to closePengcheng Shi

Pengcheng Shi

Professor
PhD Program
B. Thomas Golisano College of Computing & Information Sciences

2012 Submissions

Journal Paper

Liu, H., et al. "An H? Approach for Elasticity Properties Reconstruction." Medical Physics 39. 1 (2012): 475-481. Print. *

Hu, Z., et al. "Exploiting Magnetic Resonance Angiography Imaging Improves Model Estimation of BOLD Signal." PLoS One 7. 2 (2012): e31612. Web. * £

Liu, H., et al. "Robust Framework for PET Image Reconstruction Incorporating System and Measurement Uncertainties." PLoS One 7. 3 (2012): e32224. Web. * £

Yu, F., et al. "GPU Accelerated Particle Filter Framework for PET Image Reconstruction." Journal of the Optical Society of America A 29. 4 (2012): 637-643. Print. * £

Hu, Z., H. Liu, and P. Shi. "Concurrent Bias Correction in Hemodynamic Data Assimilation." Medical Image Analysis 16. 7 (2012): 1456-1464. Print. * £

Hu, Z., et al. "Quantitative Evaluation of Activation State in Functional Brain Imaging." Brain Topography 25. 4 (2012): 362-373. Print. * £

Liu, H., P. Shi, and Y. Chen. "Integrative Approaches in Computational Biomedical Imaging." Computational and Mathematical Methods in Medicine 12. (2012): doi:10.1155/2012/162892. Web. ∆

Published Conference Proceedings

Yu, F., H. Liu, and P. Shi. "PET Image Reconstruction Based on Particle Filter Framework." Proceedings of the IEEE International Conference on Biomedical and Health Informatics (BHI), Hong Kong, January, 2012. Ed. Zhi-Pei Liang. New York, NY: IEEE, Print. «

Li, R., et al. "Learning Eye Movement Patterns for Characterization of Perceptual Expertise." Proceedings of the ACM Eye Tracking Research and Applications, Santa Barbara, California, March, 2012. Ed. Carlos Hitoshi Morimoto, et al. New York, NY: ACM, 2012. Print. *

Mao, H., et al. "Towards Integrated Personalization of Cardiac Electromechanics." Proceedings of the IEEE International Symposium on Biomedical Imaging: Nano to Macro, Barcelona, Spain, May, 2012. Ed. Alejandro Frangi, et al. New York, NY: IEEE, 2012. Print. * ∆

Camara, O., et al. "Integration of Different Cardiac Electrophysiological Models into A Single Simulation Pipeline." Proceedings of the IEEE International Symposium on Biomedical Imaging: Nano to Macro, Barcelona, Spain, May, 2012. Ed. Alejandro Frangi, et al. New York, NY: IEEE, 2012. Print. * ∆

McCoy, W., et al. "Annotation Schemes to Encode Domain Knowledge in Medical Narratives." Proceedings of the 6th ACL Linguistic Annotation Workshop, Jeju, Korea, July, 2012. Ed. Nancy Ide, Fei Xia. Stroudsburg, PA: ACL, Web. *

McCoy, W., et al. "Linking Uncertainty in Physicians? Narratives to Diagnostic Correctness." Proceedings of the Extra-Propositional Aspects of Meaning in Computational Linguistics, Jeju, Korea, July, 2012. Ed. Roser Morante, Caroline Sporleder. Stroudsburg, PA: ACL, Web. *

Womack, K., et al. "Disfluencies as Extra-Propositional Indicators of Cognitive Processing." Proceedings of the Extra-Propositional Aspects of Meaning in Computational Linguistics, Jeju, Korea, July, 2012. Ed. Roser Morante, Caroline Sporleder. Stroudsburg, PA: ACL, Web. *

Li, R., et al. "Learning Image-Derived Eye Movement Patterns to Characterize Perceptual Expertise." Proceedings of the 34th Annual Meeting of the Cognitive Science Society, Sapporo, Japan, August, 2012. Ed. Naomi Miyake, David Peebles, and Richard P Coope. Austin, TX: Cognitive Science Society, 2012. Web. «

Wong, K. C. L., et al. "Strain-Based Regional Nonlinear Cardiac Material Properties Estimation From Medical Images." Proceedings of the Medical Image Computing and Computer Assisted Intervention (MICCAI), Nice, France, October, 2012. Ed. Nicholas Ayache, et al. Berlin Heidelberg, Germany: Springer-Verlag, 2012. Print. «

Gao, F., H. Liu, and P. Shi. "Patient-Adaptive Lesion Metabolism Analysis by Dynamic PET Images." Proceedings of the Medical Image Computing and Computer Assisted Intervention (MICCAI), Nice, France, October, 2012. Ed. Nicholas Ayache, et al. Berlin Heidelberg, Germany: Springer-Verlag, 2012. Print. «

Preethi, V., et al. "Visualinguistic Approach to Medical Image Understanding." Proceedings of the AMIA 2012 Annual Symposium, Chicago, November, 2012. Ed. William Hersh. Chicago, IL: AMIA, Web. *

Invited Presentations/Keynotes

Shi, Pengcheng. "Towards Integrated Personalization of Cardiac Electromechanics." IEEE International Symposium on Biomedical Imaging: Nano to Macro. IEEE. Barcelona, Spain. 5 May 2012. Lecture. *

Shi, Pengcheng and Fei Gao. "Computational Image Analysis in Molecular Imaging." Modeling and Analysis of Molecular Imaging. MICCAI. Nice, France. 5 Oct. 2012. Lecture.

Shi, Pengcheng. "From Image Data to Functional Personalization: An Integrative System Paradigm for Biomedical Imaging." Western New York Image Processing Workshop. IEEE. Rochester, NY. 9 Nov. 2012. Keynote Speech.

Shi, Pengcheng. "Personalized Noninvasive Imaging of Volumetric Cardiac Electrophysiology." Xerox Research Seminar. Xerox Research & Technology. Webster, NY. 22 Mar. 2012. Guest Lecture.

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click to expandclick to closeLinwei Wang

Linwei Wang

Assistant Professor
PhD Program
B. Thomas Golisano College of Computing & Information Sciences

2012 Submissions

Journal Paper

Wang, Linwei, et al. "Transmural Imaging of Ventricular Action Potentials and Post-Infarction Scars in Swine Hearts." IEEE Transactions on Medical Imaging. (2012): in press. Print. *

Wang, Linwei. "Computational Reduction for Noninvasive Transmural Electrophysiological Imaging." Computers in Biology and Medicine. (2012): in press. Print. *

Rahimi, Azar, Jingjia Xu, and Linwei Wang. "Impact of Local Variations in Ventricular Anatomical Models on Transmural Electrophysiological Imaging." Computing in Cardiology. (2012): 957-960. Print. «

Wong, Ken CL, et al. "Strain-Based Regional Nonlinear Cardiac Material Properties Estimation from Medical Images." Medical Image Computing and Computer-Assisted Intervention. (2012): 617-624. Print. «

Corraine, Martin, Sonia Lopez, and Linwei Wang. "GPU Accelerations of Transmural Electrophysiological Imaging." Computing in Cardiology. (2012): 849-952. Print. «

Wang, Linwei and Fady Dawoud. "Transmural Imaging of Ventricular Action Potentials and Post-Infarct Substrates in Porcine Hearts." Computing in Cardiology. (2012): 749-752. Print. «

Mao, Hongda, et al. "Towards Integrated Noninvasive Personalization of Cardiac Electromechanics." IEEE International Symposium on Biomedical Imaging. (2012): 1430-1433. Print. *

Camara, Oscar, et al. "Integration of Different Cardiac Electrophysiological Models into a Single Simulation Pipeline." IEEE International Symposium on Biomedical Imaging. (2012): 1429. Print. *

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click to expandclick to closeChun Lok Wong

Chun Lok Wong

Visiting Assistant Professor
PhD Program
B. Thomas Golisano College of Computing & Information Sciences

2012 Submissions

Journal Paper

Sermesant, Maxime, et al. "Patient-specific Electromechanical Models of the Heart for the prediction of pacing Acute Effects in CRT: A Preliminary Clinical Validation." Medical Image Analysis 16. 1 (2012): 201-215. Print. *

Published Conference Proceedings

Wong, Ken C L, et al. "Strain-Based Regional Nonlinear Cardiac Material Properties Estimation From Medical Images." Proceedings of the International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), Oct 1-5, 2012, Nice, France. Ed. Nicholas Ayache, et al. : Springer, 2012. Print. «

Mao, Hongda, et al. "Towards Integrated Noninvasive Personalization of Cardiac Electromechanics." Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI), May 2-5, 2012, Barcelona, Spain. : IEEE, 2012. Print. «

Camara, Oscar, et al. "Integration of Different Cardiac Electrophysiological Models into A Single Simulation Pipeline." Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI), May 2-5, 2012, Barcelona, Spain. Ed. NA. NA, NA: IEEE, 2012. Print. «

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