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College of Science

College of Science

SCHOOL OF LIFE SCIENCES

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click to expandclick to closeLarry Buckley

Larry Buckley

Associate Professor
School of Life Sciences
College of Science

2011 Submissions

Invited Presentations/Keynotes

Dedrick, Sandra and Larry Buckley. "Phylogeographic Analysis of the Mexican Black Iguana - Ctenosaura pectinata." Evolution 2011. Society for the Study of Evolution/Society of Systematic Biologists. University of Oklahoma, Norman, OK. 19 Jun. 2011. Conference Presentation. †

Bell, Kayla and Larry Buckley. "Phylogenetic Relationships within the Order Isopoda." Evolution 2011. Society for the Study of Evolution & Society of Systematic Biologists. University of Oklahoma, Norman, OK. 19 Jun. 2011. Conference Presentation. †

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click to expandclick to closeIrene Evans

Irene Evans

Professor
School of Life Sciences
College of Science

2011 Submissions

Published Conference Proceedings

Evans, Irene M., et al. "Microarray Analysis to Probe Gene Expression in [PSI+], a Prion-Containing Yeast Cell." Proceedings of the American Society for Cell Biology, 12/3-7, 2011, Denver CO. Ed. American Society for Cell Biology. Unknown: n.p., 2011. Web. ˜

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click to expandclick to closeElizabeth Hane

Elizabeth Hane

Associate Professor
School of Life Sciences
College of Science

2011 Submissions

Journal Paper

Brister, E., E. Hane, and K. Korfmacher. "Visualizing Plant Community Change Using Historical Records." International Journal of Applied Geospatial Research 2. 4 (2011): 1-18. Print. *

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click to expandclick to closeAnne Houtman

Anne Houtman

Professor
School of Life Sciences
College of Science

2011 Submissions

Journal Paper

Zuk, Marlene and Anne M. Houtman. "Wholphins and Other Wonders of Bio for Biz Majors." Chronicle of Higher Education. (2011): 1. Print.

Invited Presentations/Keynotes

Castro, Carina. "Song and Male Quality in the Black-throated Sparrow, Amphispiza Bilineata." Animal Behaviour Society Annual Meeting. Animal Behaviour Society. Indiana University, Bloomington, IN. 28 Jul. 2011. Conference Presentation. £

Tran, Uyen. "Correlates of Song in Costa's Hummingbird, Calypte Costae." Animal Behaviour Society Annual Meeting. Animal Behaviour Society. Indiana University, Bloomington, IN. 27 Jul. 2011. Conference Presentation. £

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click to expandclick to closeAndre Hudson

Andre Hudson

Assistant Professor
School of Life Sciences
College of Science

2011 Submissions

Journal Paper

Hudson, A.O., I. Giron, and R. Dobson. "Crystallization and Preliminary X-ray Diffraction Analysis of L,L-diaminopimelate Aminotransferase (DapL) from Chlamydomonas Reinhardtii." Acta Cryst F67. (2011): 140-143. Print. *

Hudson, A.O., et al. "Dual Diaminopimelate Biosynthesis Pathways in Bacteroides Fragilis and Clostridium." BBA proteins and proteomics 1814. (2011): 1162-1168. Print. *

Hudson, A.O., I. Giron, and R. Dobson. "L,L-Diaminopimelate Aminotransferase from Chlamydomonas Reinhardtii: A Target for Algaecide Development." PLoS ONE 6. 5 (2011): 1-12. Web. *

Bulman, Z., et al. "A Novel Property of Propolis (bee glue): Anti-pathogenic activity by Inhibition of N-acyl-homoserine Lactone Mediated Signaling in Bacteria." Journal of Ethanopharmacology 138. (2011): 788-797. Print. *

Book Chapter

Hudson, A.O. and M.A. Savka. "Bioluminescence Biosensor Strains for Detection of Quorum Sensing N-acyl-homoserine Lactone Signal Molecules." Bioluminescence. U.S.A.: Nova Publishers, 2011. 747-3. Print. £

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click to expandclick to closeKarl Korfmacher

Karl Korfmacher

Associate Professor
School of Life Sciences
College of Science

2011 Submissions

Journal Paper

Brister, Evelyn, Elizabeth Hane, and Karl Korfmacher. "Visualizing Plant Community Change Using Historical Records." International Journal of Applied Geospatial Research 2. 4 (2011): 1-18. Print. «

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click to expandclick to closeJeffrey Lodge

Jeffrey Lodge

Associate Professor
School of Life Sciences
College of Science

2011 Submissions

Journal Paper

Cheng, Yujie, et al. "Evaluation Study of Vanillin, Curcumin, and Tumeric with Potential Use in Antimicrobial Packaging Applications." Journal of Applied Packaging Research 5. 4 (2011): 215-226. Print. * £

External Scholarly Fellowships

4/1/2012 - 8/1/2012
     Private Donations (working with Dr. J. Clemente, Warren NJ, Marymount Medical)
     Amount: $10,000 ≠

Invited Presentations/Keynotes

Adams, Cole, et al. "The Use of Various Microalgae to Clean Wastewater and Possible Utilization of Algal Biomass for Energy Production." Algal Biomass Summit. Algal Biomass Organization. Hyatt Regency Hotel, Minneapolis, MN. 25-27 Oct. 2011. Conference Presentation. £

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click to expandclick to closeDina Newman

Dina Newman

Assistant Professor
School of Life Sciences
College of Science

2011 Submissions

Journal Paper

Wright, L.K. and D.L. Newman. "Interactive Modeling Lesson Increases Student Understanding of Ploidy During Meiosis." Biochemistry and Molecular Biology Education 39. 5 (2011): 344-351. Print. *

Invited Presentations/Keynotes

Newman, Dina L. and Ricki Lewis. "How NOT to Write Multiple Choice Questions." Undergraduate Faculty Genetics Education Workshop. American Society of Human Genetics. Palais Des Congres De Montreal, Montreal, Canada. 11 Oct. 2011. Lecture. ∆

Newman, Dina L. "Do your Students Really Know What a Chromosome is?" Undergraduate Faculty Genetics Education Workshop. American Society of Human Genetics. Palais Des Congres De Montreal, Montreal, Canada. 11 Oct. 2011. Lecture. ∆

Shows/Exhibits/Installations

Newman, Dina L. Is It In Your Genes? By Dina L. Newman, et al. 5 May 2011. Imagine RIT, Rochester, NY. Exhibit. †

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click to expandclick to closeMichael Osier

Michael Osier

Associate Professor
School of Life Sciences
College of Science

2011 Submissions

Journal Paper

Wu, X., et al. "Genes and Biochemical Pathways in Human Skeletal Muscle Affecting Resting Energy Expenditure and Fuel Partitioning." Journal of Applied Physiology 110. (2011): 746-755. Print. *

Taylor, S.L., et al. "Urine Metabolomic Analysis Identifies Potential Biomarkers and Pathogenic Pathways in Kidney Cancer." OMICS: A Journal of Integrative Biology 15. (2011): 293-303. Print. *

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click to expandclick to closeF Pough

F Pough

Professor
School of Life Sciences
College of Science

2011 Submissions

Published Conference Proceedings

Tabisz, Michelle and F Harvey Pough. "Aggregation Pheromones of Isopods." Proceedings of the Rochester Academy of Sciences, 20 October 2011, Rochester, NY. Ed. NA. Rochester, NY: n.p., 2011. Print. ˜

Sood, Harshita and F Harvey Pough. "Avoidance of Heavy Metals by Terrestrial Isopods." Proceedings of the Rochester Academy of Sciences, 29 October 2011, Rochester, NY. Ed. NA. Rochester, NY: n.p., 2011. Print. ˜

Perkins, Lydia and F Harvey Pough. "Illustrated Key to the Isopods of New York." Proceedings of the Rochester Academy of Sciences, 29 October 2011, Rochester, NY. Ed. NA. Rochester, NY: n.p., 2011. Print. ˜

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click to expandclick to closeVicente Reyes

Vicente Reyes

Assistant Professor
School of Life Sciences
College of Science

2011 Submissions

Journal Paper

Reyes, Vincente M. "Representation of Protein 3D Structures in Spherical Coordinates and Two of Its Potential Applications." Interdiscip. Sci.: Comp. Life Sci. 3. 3 (2011): 161-174. Print. £

Book Chapter

Reyes, Vincente M. and Vrunda N. Sheth. "Visualization of Protein 3D Structures in 'Double-Centroid' Reduced Representation: Application to Ligand Binding Site Modeling and Screening." Handbook of Research in Computational and Systems Biology: Interdisciplinary Approaches. Ed. Liu, Limin Angela, et al. Hershey, NY: IGI-Global/Springer, 2011. 583-598. Print. £

Published Conference Proceedings

Reyes, Vincente M. and Srujana R. Cheguri. "A Database/Webserver for Size-Independent Quantification of Ligand Binding Site Burial Depth in Receptor Proteins: Implications on Protein Dynamics." Proceedings of the J. Biomol. Struct. & Dyn., Book of Abstracts, Albany 2011: The 17th Conversation, June 14-18, 2011, Vol. 28 (6) June 2011, p. 1013. Ed. Sarma, Ramaswamy. Albany, NY: Adenine Press, 2011. Print. *

Reyes, Vincente M. and Srujana R. Cheguri. "Using Cylindrical Coordinates to Represent Rod-Shaped and Other Fibrous Protein 3D Structures: Potential Advantages and Applications." Proceedings of the J. Biomol. Struct. & Dyn., Book of Abstracts, Albany 2011: The 17th Conversation, June 14-18, 2011, Vol. 28 (6) June 2011, p. 1014. Ed. Sarma, Ramaswamy. Albany, NY: Adenine Press, 2011. Print. *

Reyes, Vincente M. and James DeFelice. "Towards a Spherical Coordinate System Metric for Quantitative Comparison of Protein 3D Structures." Proceedings of the J. Biomol. Struct. & Dyn., Book of Abstracts, Albany 2011: The 17th Conversation, June 14-18, 2011, Vol. 28 (6) June 2011, p. 1015. Ed. Sarma, Ramaswamy. Albany, NY: Adenine Press, 2011. Print. *

Reyes, Vincente M. and Preety F. Priya. "Cancer Meets the "Omics": A Comprehensive Cancer Biotherapy Database with Links to Multiple Bioinformatics Websites/WebServers - Facilitating the Search for Anticancer Biological Agents." Proceedings of the J. Biomol. Struct. & Dyn., Book of Abstracts, Albany 2011: The 17th Conversation, June 14-18, 2011, Vol. 28 (6) June 2011, p. 1016. Ed. Sarma, Ramaswamy. Albany, NY: Adenine Press, 2011. Print. *

Reyes, Vincente M. "Using Cartographic Techniques to Project Protein 3D Surfaces onto the 2D Plane: Potential Applications and Implications." Proceedings of the J. Biomol. Struct. & Dyn., Book of Abstracts, Albany 2011: The 17th Conversation, June 14-18, 2011, Vol. 28 (6) June 2011, p. 1017. Ed. Sarma, Ramaswamy. Albany, NY: Adenine Press, 2011. Print. *

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click to expandclick to closeMichael Savka

Michael Savka

Professor
School of Life Sciences
College of Science

2011 Submissions

Journal Paper

Bulman, Zack, et al. "A Novel Property of Propolis (bee glue): Anti-pathogenic Activity by Inhibition of N-acyl-homoserine Lactone Mediated Signaling in Bacteria." Journal of Ethnopharmacology 138. (2011): 788-797. Print. *

Book Chapter

Savka, Michael A., et al. "Grapevine Pathogens Spreading with Sropagating Plant stock: Detection and Methods for Elimination." Grapevines: Varieties, Cultivation. Ed. P.V. Szabo and J. Shojania. New York: Nova Science Publishers, 2011. 1-88. Print. ∆

Published Review

Savka, Michael A. and Andre O Hudson. "Bioluminescence." Rev. of Bioluminescence Biosensor Strains for the Detection of Quorum-sensing N-acyl-homoserine Lactone Signal Molecules., ed. DJ Rodgerson. Nova Scientific Publishers 2011: 49-70. Print. *

Published Conference Proceedings

Bulman, Zack, Andre O. Hudson, and Michael A. Savka. "Propolis, a Product of the Bee Hive, has an Antagonistic Affect on Quorum-sensing Regulated Bioluminescence, Gene Transcription and Motility." Proceedings of the American Society for Biochemistry & Molecular Biology Meeting. Ed. K. Cornely, P. Ortiz, and M.A. Wallert. Washington, DC: American Society for Biochemistry & Molecular Biology, 2011. Print. *

Subki, Mior MM Ahmad, et al. "Isolation and Identification of Methylobacterium sp. From Grapevine Xylem Fluids and Mutants Deficient in Acyl-homoserine Signal Production, Abstract 818." Proceedings of the American Society for Microbiology, 111th General Meeting. Ed. American Society for Microbiology. New Orleans, LA: American Society for Microbiology, 2011. Print. *

Aziz, Nazrin A. and Michael A. Savka. "Screening of Transposon Mutants of Sphingobium sp. KK22 Altered in Quorum-sensing Signal Synthesis." Proceedings of the Rochester Academy of Sciences, Fall 2011 Scientific Paper Day. Ed. Monroe Community College. Rochester, NY: Rochester Academy of Sciences, 2011. Print. †

Sorensen, Ryan and Michael A. Savka. "Disruption of Bacterial Signaling by Beehive Plant Resins." Proceedings of the Rochester Academy of Sciences, Fall 2011 Scientific Paper Day. Ed. Monroe Community College. Rochester, NY: Rochester Academy of Sciences, 2011. Print. †

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click to expandclick to closePaul Shipman

Paul Shipman

Associate Professor
School of Life Sciences
College of Science

2011 Submissions

Invited Presentations/Keynotes

Shipman, Paul. "Panel One: Traditional Ecological Knowledge - Western and Native Science." Thirty-Fifth Annual National Indian Timber Symposium. Intertribal Timber Council. Black Bear Resort and Casino, Carlton, MN. 14 Jun. 2011. Conference Presentation. ∆

Shipman, Paul and Robyn Wilson. "Plant Knowledge Roundtable - Cherokee Plant Database." Traditional Ecological Knowledge Conference. University of New Hampshire. The Browne Center, Durham, NH. 23 Sep. 2011. Conference Presentation. ∆

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click to expandclick to closeSusan Smith

Susan Smith

Assistant Professor
School of Life Sciences
College of Science

2011 Submissions

Journal Paper

Smith, Susan B. and Peter W.C. Paton. "Long-Term Shifts in Autumn Migration by Songbirds at a Coastal Eastern North American Stopover Site." The Wilson Journal of Ornithology 123. 3 (2011): 557-566. Print. £

Invited Presentations/Keynotes

Smith, Susan B. "Migration Timing and Climate Change in the eastern U.S." Northeastern Natural History Conference. Association of Northeastern Biologists. Albany, NY. 7 Apr. 2011. Conference Presentation. ∆

Journal Editor

Smith, Susan B., ed. Northeastern Naturalist. Steuben, ME: The Humboldt Field Research Institute, 2011. Print. £

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click to expandclick to closeHyla Sweet

Hyla Sweet

Associate Professor
School of Life Sciences
College of Science

2011 Submissions

Invited Presentations/Keynotes

Sweet, Hyla. "Developmental Biology Lab: In Situ Hybridization Screen for Candidate Genes Identified From a Transcriptome Sequencing Project." Developmental Biology of the Sea Urchin XX. Marine Biological Laboratory. Marine Biological Laboratory, Woods Hole, MA. 30 Apr. 2011. Conference Presentation. †

Sharma, Deepika, Rae Ann Covington, and Hyla Sweet. "Spatial Expression Patterns of Delta, gcm and Brachyury in the Cidaroid Sea Urchin Eucidaris Tribuloides." Developmental Biology of the Sea Urchin XX. Marine Biological Laboratory. Marine Biological Laboratory, Woods Hole, MA. 28 Apr. 2011. Conference Presentation. † ≠

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click to expandclick to closeAnna Tyler

Anna Tyler

Assistant Professor
School of Life Sciences
College of Science

2011 Submissions

Journal Paper

McLenaghan, N.A., et al. "Benthic Macroinvertebrate Diversity Regulates Nutrient and Algal Dynamics in a Shallow Estuary." Marine Ecology Progress Series 426. (2011): 171-184. Print. * † ≠

Published Conference Proceedings

Mahl, U.H., A.C. Tyler, and E.D. Grosholz. "The Impact of Benthic Invertebrates on Porewater Ammonium and Sulfide: Consequences for Spartina Seedling Growth." Proceedings of the Third International Conference on Invasive Spartina. Ed. Ayres, DR, DW Kerr, SD Ericson and PR Olofson. Cambridge, UK: Cambridge Publications Limited, 2011. Print. * ∆

Tyler, A.C. and E.D. Grosholz. "Spartina Invasion Changes Intertidal Ecosystem Metabolism in San Francisco Bay." Proceedings of the Third International Conference on Invasive Spartina. Ed. Ayres, DR, DW Kerr, SD Ericson and PR Olofson. Cambridge, UK: Cambridge Publications Limited, 2011. Print. * ∆

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click to expandclick to closeLeslie Kate Wright

Leslie Kate Wright

Assistant Professor
School of Life Sciences
College of Science

2011 Submissions

Journal Paper

Wright, L. Kate and Dina L. Newman. "An Interactive Modeling Lesson Increases Student Understanding of Ploidy During Meiosis." Biochemistry and Molecular Biology Education 39. 5 (2011): 344-51. Print. *

Invited Presentations/Keynotes

Wright, L. Kate, Chistina Catevaro, and Dina L. Newman. "Why Undergraduate Biology Majors Miss the Concept of Homologous Chromosomes." Society for Advancement of Undergraduate Education conference, 1st Annual Conference. Society for Advancement of Undergraduate Education (SABER). University of Minnesota East campus, Minneapolis, MN. 29-31 Jul. 2011. Conference Presentation. £

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click to expandclick to closeYosef Zlochower

Yosef Zlochower

Associate Professor
School of Life Sciences, School of Mathematical Sciences
College of Science

2011 Submissions

Journal Paper

Babiuc, M. C., J. Winicour, and Y. Zlochower. "Binary Black Hole Waveform Extraction at Null Infinity." Class. Quant. Grav. 28. (2011): 134006-. Print. * £

Mundim, Bruno, et al. "Hybrid Black-hole Binary Initial Data." Class. Quant. Grav. 28. (2011): 134003-. Print. * £

Babiuc, M. C., et al. "A Characteristic Extraction Tool for Gravitational Waveforms." Phys. Rev. D 84. (2011): 044057-. Print. * £

Nakano, Hiroyuki, et al. "Perturbative Effects of Spinning Black Holes with Applications to Recoil Velocities." Class. Quant. Grav. 28. (2011): 134005-. Print. * £

Zlochower, Yosef, Manuela Campanelli, and Carlos Lousto. "Modeling Gravitational Recoil Using Numerical Relativity." Class. Quant. Grav. 28. (2011): 114015-. Print. * £

Lousto, Carlos and Yosef Zlochower. "Modeling Maximum Astrophysical Gravitational Recoil Velocities." Phys. Rev. D 83. (2011): 024003-. Print. * £

Lousto, Carlos and Yosef Zlochower. "Orbital Evolution of Extreme-Mass-Ratio Black-Hole Binaries with Numerical Relativity." Phys. Rev. Lett 106. (2011): 041101-. Print. * £

Ponce, Marcelo, Carlos Lousto, and Yosef Zlochower. "Seeking for Toroidal Event Horizons from Initially Stationary BH Configurations." Class. Quant. Grav. 28. (2011): 145027-. Print. * £

Lousto, Carlos and Yosef Zlochower. "Hangup Kicks: Still Larger Recoils by Partial Spin-Orbit Alignment of Black-Hole Binaries." Phys. Rev. Lett 107. (2011): 231102-. Print. * £

Nakano, Hiroyuki, et al. "Intermediate-mass-ratio black hole binaries II: Modeling Trajectories and Gravitational Waveforms." Physical Review D 84. (2011): 124006. Print. £

Invited Presentations/Keynotes

Zlochower, Yosef. "Modeling 1/10 to 1/100 Black Hole Binaries Using Numerical Relativity." Eastern Gravity Meeting. Princeton. Princeton, NJ. 2 Jun. 2011. Conference Presentation.

Zlochower, Yosef. "Fully Nonlinear Numerical Evolutions of Small-Mass-Ratio Black-Hole Binaries." APS April Meeting. APS. Anaheim, CA. 1 May 2011. Conference Presentation. £

Zlochower, Yosef. "Recent Advances in Modeling Black-Hole Binaries." RIT SMS Colloquium. RIT. Rochester, NY. 30 Mar. 2011. Address. £

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