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Scholarly Works

Pengcheng Shi
Professor

2013 Submissions

Journal Paper

Mao, Hongda, et al. "Embryonic Heart Morphogenesis from Confocal Microscopy Imaging and Automatic Segmentation." Computational and Mathematical Methods in Medicine. (2013): 1-7. Print. *

Wang, Linwei, et al. "Transmural Imaging of Ventricular Action Potentials and Post-Infarction Scars in Swine Hearts." IEEE Transactions on Medical Imaging 32. 4 (2013): 731-747. Print. *

Published Conference Proceedings

Li, Rui, Pengcheng Shi, and Anne R. Haake. "Image Understanding from Experts' Eyes by Modeling Perceptual Skill of Diagnostic Reasoning Processes." Proceedings of the 2013 IEEE Conference on Computer Vision and Pattern Recognition. Ed. Gerard Medioni and Ramin Zabih. Portland, OR: IEEE, Print. «

Womack, Kathryn, et al. "Markers of Confidence and Correctness in Spoken Medical Narratives." Proceedings of the 14th Annual Conference of the International Speech Communication Association. Ed. Frédéric Bimbot, et al. Lyon, FR: INTERSPEECH, 2013. Print. *

Womack, Kathryn, et al. "Using Linguistic Analysis to Characterize Conceptual Units of Thought in Spoken Medical Narratives." Proceedings of the 14th Annual Conference of the International Speech Communication Association. Ed. Christophe Cerisara, et al. Lyon, FR: INTERSPEECH, 2013. Print. «

Gao, Fei, et al. "Reinforcement Learning Based Model Selection and Parameter Estimation for Pharmacokinetic Analysis in Drug Selection." Proceedings of the Augmented Reality Environments for Medical Imaging and Computer-Assisted Interventions. Ed. Hongen Liao, et al. Nagoya, JP: Springer, 2013. Print. «

Invited Presentations/Keynotes

Shi, Pengcheng. "Tutorials on Analysis and Applications of Molecular Imaging." Medical Image Computing and Computer Assisted Intervention. MICCAI. Nagoya, JP. 22 Sep. 2013. Keynote Speech. ∆

Journal Editor

Liu, Huafeng, Pengcheng Shi, and Yunmei Chen, ed. Computational and Mathematical Methods in Medicine. New York: n.p., 2013. Print. * ∆

2012 Submissions

Journal Paper

Liu, H., et al. "An H? Approach for Elasticity Properties Reconstruction." Medical Physics 39. 1 (2012): 475-481. Print. *

Hu, Z., et al. "Exploiting Magnetic Resonance Angiography Imaging Improves Model Estimation of BOLD Signal." PLoS One 7. 2 (2012): e31612. Web. * £

Liu, H., et al. "Robust Framework for PET Image Reconstruction Incorporating System and Measurement Uncertainties." PLoS One 7. 3 (2012): e32224. Web. * £

Yu, F., et al. "GPU Accelerated Particle Filter Framework for PET Image Reconstruction." Journal of the Optical Society of America A 29. 4 (2012): 637-643. Print. * £

Hu, Z., H. Liu, and P. Shi. "Concurrent Bias Correction in Hemodynamic Data Assimilation." Medical Image Analysis 16. 7 (2012): 1456-1464. Print. * £

Hu, Z., et al. "Quantitative Evaluation of Activation State in Functional Brain Imaging." Brain Topography 25. 4 (2012): 362-373. Print. * £

Liu, H., P. Shi, and Y. Chen. "Integrative Approaches in Computational Biomedical Imaging." Computational and Mathematical Methods in Medicine 12. (2012): doi:10.1155/2012/162892. Web. ∆

Published Conference Proceedings

Yu, F., H. Liu, and P. Shi. "PET Image Reconstruction Based on Particle Filter Framework." Proceedings of the IEEE International Conference on Biomedical and Health Informatics (BHI), Hong Kong, January, 2012. Ed. Zhi-Pei Liang. New York, NY: IEEE, Print. «

Li, R., et al. "Learning Eye Movement Patterns for Characterization of Perceptual Expertise." Proceedings of the ACM Eye Tracking Research and Applications, Santa Barbara, California, March, 2012. Ed. Carlos Hitoshi Morimoto, et al. New York, NY: ACM, 2012. Print. *

Mao, H., et al. "Towards Integrated Personalization of Cardiac Electromechanics." Proceedings of the IEEE International Symposium on Biomedical Imaging: Nano to Macro, Barcelona, Spain, May, 2012. Ed. Alejandro Frangi, et al. New York, NY: IEEE, 2012. Print. * ∆

Camara, O., et al. "Integration of Different Cardiac Electrophysiological Models into A Single Simulation Pipeline." Proceedings of the IEEE International Symposium on Biomedical Imaging: Nano to Macro, Barcelona, Spain, May, 2012. Ed. Alejandro Frangi, et al. New York, NY: IEEE, 2012. Print. * ∆

McCoy, W., et al. "Annotation Schemes to Encode Domain Knowledge in Medical Narratives." Proceedings of the 6th ACL Linguistic Annotation Workshop, Jeju, Korea, July, 2012. Ed. Nancy Ide, Fei Xia. Stroudsburg, PA: ACL, Web. *

McCoy, W., et al. "Linking Uncertainty in Physicians? Narratives to Diagnostic Correctness." Proceedings of the Extra-Propositional Aspects of Meaning in Computational Linguistics, Jeju, Korea, July, 2012. Ed. Roser Morante, Caroline Sporleder. Stroudsburg, PA: ACL, Web. *

Womack, K., et al. "Disfluencies as Extra-Propositional Indicators of Cognitive Processing." Proceedings of the Extra-Propositional Aspects of Meaning in Computational Linguistics, Jeju, Korea, July, 2012. Ed. Roser Morante, Caroline Sporleder. Stroudsburg, PA: ACL, Web. *

Li, R., et al. "Learning Image-Derived Eye Movement Patterns to Characterize Perceptual Expertise." Proceedings of the 34th Annual Meeting of the Cognitive Science Society, Sapporo, Japan, August, 2012. Ed. Naomi Miyake, David Peebles, and Richard P Coope. Austin, TX: Cognitive Science Society, 2012. Web. «

Wong, K. C. L., et al. "Strain-Based Regional Nonlinear Cardiac Material Properties Estimation From Medical Images." Proceedings of the Medical Image Computing and Computer Assisted Intervention (MICCAI), Nice, France, October, 2012. Ed. Nicholas Ayache, et al. Berlin Heidelberg, Germany: Springer-Verlag, 2012. Print. «

Gao, F., H. Liu, and P. Shi. "Patient-Adaptive Lesion Metabolism Analysis by Dynamic PET Images." Proceedings of the Medical Image Computing and Computer Assisted Intervention (MICCAI), Nice, France, October, 2012. Ed. Nicholas Ayache, et al. Berlin Heidelberg, Germany: Springer-Verlag, 2012. Print. «

Preethi, V., et al. "Visualinguistic Approach to Medical Image Understanding." Proceedings of the AMIA 2012 Annual Symposium, Chicago, November, 2012. Ed. William Hersh. Chicago, IL: AMIA, Web. *

Invited Presentations/Keynotes

Shi, Pengcheng. "Towards Integrated Personalization of Cardiac Electromechanics." IEEE International Symposium on Biomedical Imaging: Nano to Macro. IEEE. Barcelona, Spain. 5 May 2012. Lecture. *

Shi, Pengcheng and Fei Gao. "Computational Image Analysis in Molecular Imaging." Modeling and Analysis of Molecular Imaging. MICCAI. Nice, France. 5 Oct. 2012. Lecture.

Shi, Pengcheng. "From Image Data to Functional Personalization: An Integrative System Paradigm for Biomedical Imaging." Western New York Image Processing Workshop. IEEE. Rochester, NY. 9 Nov. 2012. Keynote Speech.

Shi, Pengcheng. "Personalized Noninvasive Imaging of Volumetric Cardiac Electrophysiology." Xerox Research Seminar. Xerox Research & Technology. Webster, NY. 22 Mar. 2012. Guest Lecture.

2011 Submissions

Journal Paper

Wang, L., et al. "Noninvasive Computational Imaging of Cardiac Electrophysiological for 3D Infarct Detection and Quantitation." IEEE Transactions on Biomedical Engineering 58. 4 (2011): 1033-1043. Print. *

Wong, K. C. L., et al. "Physiological Fusion of Functional and Structural Images for Cardiac Deformation Recovery." IEEE Transactions on Medical Imaging 30. 4 (2011): 990-1000. Print. *

Tong, S., et al. "A Robust State-Space Kinetics-Guided Framework for Dynamic PET Image Reconstruction." Physics in Medicine and Biology 56. 8 (2011): 2481-2499. Print. *

Camara, O., et al. "Inter-Model Consistency and Complementarity: Learning from ex-vivo Imaging and Electrophysiological Data Towards An Integrated Understanding of Cardiac Physiology." Progress in Biophysics and Molecular Biology 107. 1 (2011): 122-133. Print. *

Published Conference Proceedings

Elshrif, M., L. Wang, and P. Shi. "Bi-Partite Spectral Graph Co-Clustering of Cellular Transmural Transmembrane Potential Dynamics." Proceedings of the Functional Imaging and Modeling of the Heart Conference, New York, New York. Ed. D. Metaxas and L. Axel. New York: Springer, 2011. Print. «

Engelman, C., et al. "Evaluating Usability of Multimodal Interaction." Proceedings of the Novel Gaze-Controlled Applications, Karlskrona, Sweden, May, 2011. Ed. V. Sundstedt and C. C. Sennersten. New York: ACM, 2011. Web. «

Vaidyanathan, P., et al. "Vision-Based Approach to Image Understanding." Proceedings of the IEEE IVMSP Workshop on Perception and Visual Signal Analysis, Ithaca, New York, June, 2011. Ed. S. Hemami and T. N. Pappas. New Jersey: IEEE, Print. * £

Yu, F., H. Liu, and P. Shi. "PET Image Reconstruction: GPU-Accelerated Particle Filter Framework." Proceedings of the IEEE International Conference on Image Processing, Brussels, Belguim, September, 2011. Ed. B. Macq and P. Schelkens. New Jersey: IEEE, Print. *

Gao, F., H. Liu, and P. Shi. "Robust Estimation of Kinetic Parameters in Dynamic PET Imaging." Proceedings of the Medical Image Computing and Computer Assisted Intervention, Toronto, September, 2011. Ed. G. Fichtinger, T. Peters, and A. Martel. New York: Springer, Print. «

Hu, Z. and P. Shi. "Detrend-Free Hemodynamic Data Assimilation of Two-stage Kalman Estimator." Proceedings of the Medical Image Computing and Computer Assisted Intervention, Toronto, September, 2011. Ed. G. Fichtinger, T. Peters, and A. Martel. New York: Springer, Print. «

Wong, K. C. L., L. Wang, and P. Shi. "A Comparative Study of Physiological Models on Cardiac Deformation Recovery: Effects of Biomechanical Constraint." Proceedings of the Medical Image Computing and Computer Assisted Intervention, Toronto, September, 2011. Ed. G. Fichtinger, T. Peters, and A. Martel. New York: Springer, Print. «

Rahimi, A., et al. "Toward Clinically-Feasible Noninvasive Electrophysiological Imaging: Investigating the Impact of Local Anatomical Details." Proceedings of the Statistical Atlases and Computational Models of the Heart: Imaging and Modeling Challenges, Toronto, September, 2011. Ed. O. Camara, et al. New York: Springer, Print. «

Mao, H., et al. "Volumetric Modeling Electromechanics of the Heart." Proceedings of the Statistical Atlases and Computational Models of the Heart: Imaging and Modeling Challenges, Toronto, September, 2011. Ed. O. Camara, et al. New York: Springer, Print. «

Wang, L., et al. "Transmural Electrophysiologic and Scar Imaging on Porcine Heart with Chronic Infarction." Proceedings of the Statistical Atlases and Computational Models of the Heart: Imaging and Modeling Challenges, Toronto, September, 2011. Ed. O. Camara, et al. New York: Springer, Print. «

Mao, H., et al. "A Coupled Heart-Torso Framework for Cardiac Electrocardiographic Simulation." Proceedings of the Computing in Cardiology, Hangzhou, China, September, 2011. Ed. H. Duan, L. Xia, and S. Luo. New Jersey: IEEE, Web. «

Wang, L., et al. "Mapping the Transmural Scar and Activation for Patients with Ventricular Arrhythmia." Proceedings of the Computing in Cardiology, Hangzhou, China, September, 2011. Ed. H. Duan, L. Xia, and S. Luo. New Jersey: IEEE, Web. *

Invited Presentations/Keynotes

Shi, P. "Volumetric Imaging of Cardiac Electrophysiology." Yangtze River International Conference on the Applications of Medical Imaging Physics. Chinese Medical Imaging Physics Society. Hangzhou, Zhejiang, China. 22 Oct. 2011. Keynote Speech. ∆

2010 Submissions

Published Article

Wong Ken C.L., Linwei Wang, Heye Zhang, Huafeng Liu, and Pengcheng Shi. “Meshfree Implementation of Individualized Active Cardiac Dynamics.” Computerized Medical Imaging and Graphics, 34.1 (2010): 91-103. Print. † ≠ *

Wang, Linwei, Heye Zhang, Ken C.L. Wong, Huafeng Liu, and Pengcheng Shi. “Physiological-Model-Constrained Noninvasive Reconstruction of Volumetric Myocardial Transmembrane Potentials.” IEEE Transactions on Biomedical Engineering, 57.2 (2010): 296-315. Print.† *

Shen, Yunxia, Huafeng Liu, and Pengcheng Shi. “Limited View PET Reconstruction of Tissue Radioactivity Maps.” Computerized Medical Imaging and Graphics, 34.2 (2010): 142-148. Print. ≠ *

Hu, Zhenghui and Pengcheng Shi. “Sensitivity Analysis for Biomedical Models.” IEEE Transactions on Medical Imaging, 29.11 (2010): 1870-1881. Print. *

Wong, Ken C.L, Linwei Wang, Heye Zhang, and Pengcheng Shi. “Physiological Fusion of Functional and Structural Data for Cardiac Deformation Recovery.” Medical Image Computing and Computer-Assisted Intervention MICCAI 2010, 2010. 159-166. Print. † ≠ «

Gao, Fei, Huafeng Liu, and Pengcheng Shi. “Efficient Robust Reconstruction of Dynamic PET Activity Maps with Radioisotope Decay Constraints.” Medical Image Computing and Computer Assisted Intervention MICCAI 2010, 2010. 571-578. Print. ≠ «

Mao, Hongda, Huafeng Liu, and Pengcheng Shi. “A Convex Neighbor-Constrained Active Contour Model for Image Segmentation.” 17th IEEE International Conference on Image Processing (ICIP) 2010, 26-29 Sept. 2010. 793-6. Print. † *

Wong, Ken C.L., Linwei Wang, Heye Zhang, and Pengcheng Shi. “Computational Complexity Reduction Via Mode Superposition: Application to Biomechanics-Based Nonlinear Cardiac Deformation Recovery.” 17th IEEE International Conference on Image Processing (ICIP), 2010. 4417-4420. Print. †

Bing, Xu, Pengcheng Shi, Hubing Wu, Xutao Guo, Quanshi Wang, and Shuyun Zhou. “Utility of FDG PET/CT in Guiding Antifungal Therapy in Acute Leukemia Patients with Chronic Disseminated Candidiasis.” Clinical Nuclear Medicine, 35.8 (2010): 567-570. Print. ≠ *

Fang, Xin, Zhenghui Hu and Pengcheng Shi. “Neural Mass Model Driven Nonlinear EEG Analysis.” Medical Imaging and Augmented Reality, 2010. 457-466. Print. «

Zhang, Heye, Bo Li, Pengcheng Shi, Hu Qingmao, and Pheng Ann Heng. “Recovering Cardiac Electrical Activity from Medical Image Sequence: A Model-Based Approach.” Statistical Atlases and Computational Models of the Heart, 2010. 204-211. Print. ≠ «

Wang, Linwei, Ken C.L. Wong, Heye Zhang, Huafeng Liu, and Pengcheng Shi. “How Much Geometrical Detail Do We Need in Cardiac Electrophysiological Imaging? A Generic Heart-Torso Representation for Fast Subject-Specific Customization.” Statistical Atlases and Computational Models of the Heart, 2010. 232-241. Print. † «

Wang, Linwei, Ken C.L. Wong, Heye Zhang, Huafeng Liu, and Pengcheng Shi. “A Statistical Physiological Model-Constrained Framework for Computational Imaging of Subject-Specific Volumetric Cardiac Electrophysiology Using Optical Imaging and MRI Data.” Statistical Atlases and Computational Models of the Heart, 2010. 261-269. Print. «