Publications

2025

Khanal, B. 2025, Towards Robust Deep Learning for Medical Imaging With Limited and Noisy Labeled Data, Rochester Institute of Technology ProQuest Dissertations & Theses, Order No. 32038590, Rochester Institute of Technology, NY, USA, 19 May 2025. 

Legault, A., Alexani, E., Castellanos, R., Evans, C. Figer, D. F., Fullerton, A. W., Garcia, M., Herrero, A., Hillier, D. J., Lennon, D. J., Najarro, P., Negueruela, I., Patrick, L., Puls, J., Rodriguez Del Pino, B., Schoedel, R., and Tramper, F., 2025, Dissecting the Arches cluster: An ideal test bed to study the metal-rich Universe, JWST Proposal. Cycle 4, ID. #7169, 11 March 2025. 

Khanal, B., Pokhrel, S., Bhandari, S., Rana, R., Shrestha, N., Gurung, R. B., Linte, C., Watson, A., Shrestha, Y. R., and Bhattarai B. 2025, Hallucination-Aware Multimodal Benchmark for Gastrointestinal Image Analysis with Large Vision-Language Models, arXiv:2505.07001v1, cs.CV, https://doi.org/10.48550/arXiv.2505.07001, 11 May 2025.

Odden, T. O. B., and Zwickl, B. 2025, How physics students build computational literacy by creating computational literature, Journal of the Learning Sciences, Taylor & Francis Group, LLC​​​​​​​, https://doi.org/10.1080/10508406.2025.2494791, 2 May 2025.

Pina, A. R., El-Adawy, S., Verostek, M., Lewandowski, H. J., Zwickl, B. M. 2025, Investigating Opportunities for Growth and Increased Diversity in Quantum Information Science and Engineering Education in the U.S. based on an Analysis of the Current Educational Landscape, physics.ed-ph, arXiv:2505.00104v1, 30 Apr 2025.

2024

Verostek, M., Miller, C. W. and Zwickl, B. M. 2024, Alleviating the Stress of Finding a PhD Advisor, American Physical Society, Physics Magazine, DOI: 10.1103/Physics.17.76.

Zwickl, Benjamin M., Verostek, Mike, Miller, Casey W. 2024, Modeling when and how physics PhD students search for a research group: the role of interests and prior research experiences in timely group integration, https://arxiv.org/pdf/2404.11580.pdf, 23 April 2024.

Zhang, K., Xiao, K., Luntz-Martin, D., Sun, P., Sharma, S., Bhattacharya, M., and Vamivakas, A. N. 2024, Coherent control of an optical tweezer phonon laser, Opt. Express, 32, 14735-14745, https://doi.org/10.1364/OE.511600, 8 April 2024.

Kundu, Bipasha, Yang, Zixin, Simon, Richard, and Linte, Cristian 2024, Comparative analysis of non-rigid registration techniques for liver surface registration, Proc. SPIE 12928, Medical Imaging 2024: Image-Guided Procedures, Robotic Interventions, and Modeling, 129282B, https://doi.org/10.1117/12.3008594, 29 March 2024.

Silich, E. M., Bellomi, E., Sayers, J., ZuHone, J., Chadayammuri, U., Golwala, S., Hughes, D., Montaña, A., Mroczkowski, T., Nagai, D., Sánchez, D., Stanford, S. A., Wilson, G., Zemcov, M., and Zitrin, A. 2024, Improved Constraints on Mergers with SZ, Hydrodynamical simulations, Optical, and X-ray (ICM-SHOX), Paper II: Galaxy cluster sample overview, EPJ Web of Conferences 293, EDP Sciences, https://doi.org/10.1051/epjconf/202429300050, 28 March 2024.

2023

Khanal, B., Bhattarai, B., Khanal, B., Stoyanov, D., and Linte, C. A. 2023, M-VAAL: Multimodal Variational Adversarial Active Learning for Downstream Medical Image Analysis Tasks, arXiv:2306.12376v1, 21 Jun 2023.

Polly, Stephen, Bogner, Brandon, Fedorenko, Anastasiia, Phokharel, Nikhil, Ahrenkiel, Phil, Chowdhury, Subhra, Biswas, Dhrubes, Hubbard, Seth 2023, Growth optimization of quantum-well-enhanced multijunction photovoltaics, Cell Reports Physical Science 4, 101432. 21 June 2023

Upendra, Roshan R., Simon, Richard, Shontz, Suzanne M., and Linte, Cristian A. 2023, Deformable Image Registration Using Vision Transformers for Cardiac Motion Estimation from Cine Cardiac MRI Images, International Conference on Functional Imaging and Modeling of the Heart, 16 June 2023.

Pradhan, Nalinikanta, Kumar, Pardeep, Kanamoto, Rina, Dey, Tarak N., Bhattacharya, M., and Mishra, Pankaj K. 2023, Cavity optomechanical detection of persistent currents and solitons in a bosonic ring condensate, arXiv:2306.06720v1, 11 June 2023.

Mainali, Madan K., Subedi, Indra, Forbes, David V., Hubbard, Seth M., and Poddrazam, Nikolas J. 2023, Optical and electronic transport properties of epitaxial InGaAs and InAlAs in multilayer stacks, Journal of Materials Science, Springer US, Pages 1-14. 07 June 2023

2022

Spaulding, Carolyn, Taylor, Alex, Williams, Scott, Packard, Glenn, and, Kurinec, Santosh 2022, Introducing gallium in silicon and thin film polysilicon using self assembled monolayer doping, Materials Letters, Volume 325. 14 July 2022

Kamrul Hasan, S. M., and Linte, Cristian A. 2022, Joint Segmentation and uncertainty Estimation of Ventricular Structures from Cardiac MRI using a Bayesian CondenseUNet, 2022 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC) 11 July 2022

Upendra, Roshan Reddy, and Linte, Cristian A. 2022, A 3D Convolutional Neural Network with Gradient Guidance for Image Super-Resolution of Late Gadolinium Enhanced cardiac MRI, 2022 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), Glasgow, Scotland, United Kingdom, 2022, pp. 1707-1710 11 July 2022

Jackson, Peter, Merrell, Kelly, Simon, Richard, and Linte, Cristian A. 2022, Investigating uncertainty in augmented reality enhanced renal navigation using in vitro patient-specific tissue-mimicking phantoms, 2022 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), Glasgow, Scotland, United Kingdom, pp.2997-3002. 11 July 2022

Yang, Zixin, Lin, Shan, Simon, Richard, and Linte, Cristian A. 2022, Endoscope Localization and Dense Surgical Scene Reconstruction for Stereo Endoscopy by Unsupervised Optical Flow and Kanade-Lucas-Tomasi Tracking, 2022 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), Glasgow, Scotland, United Kingdom, pp. 4839-4842. 11 July 2022

2021

Borasi, Raffaella, DeMartino, Richard, Harris, Nathan and Miller, Dave 2021, Could COVID-19 be a Catalyst for Disruption in Higher Education?. 10.4324/9781003125921-15, 23 August 2021.

Griston, Molly, Botello, Jesus, Verostek, Michael, and Zwickl, Benjamin 2021, When the light bulb turns on: motivation and collaboration spark the creation of ideas for theoretical physicists. 160-165. 10.1119/perc.2021.pr.Griston. 18 August 2021

Zohrabi, Alaee, Dina, Campbell, Micah K., Zwickl, Benjamin M., 2021, Impact of virtual REU experiences on students' psychosocial gains during the COVID-19 pandemic, eprint arXiv:2108.07620, 17 August 2021

Kesgin, M., Taheri, B., Murthy, R. S., Decker, J. and Gannon, M. J. 2021, Making memories: a consumer-based model of authenticity applied to living history sites, International Journal of Contemporary Hospitality Management, Vol. 33 No. 10, pp. 3610-3635, 16 August 2021. 

Verostek, Michael, Miller, Casey, and Zwickl, Benjamin 2021, Time to PhD completion is no different between men and women despite score gap on physics GRE. 414-419. 10.1119/perc.2021.pr.Verostek. 12 August 2021

2020

Kamrul Hasan, S. M., Linte, Cristian A., 2020 "L-CO-Net: Learned Condensation-Optimization Network for Clinical Parameter Estimation from Cardia Cine MRI" arXiv.2004.11253

Oram, Kathleen, Ninkov, Zoran, Irwin, Alexis, Vorobiev, Dmitry, and Carts, Martin, 2020,. Total ionizing dose effects on digital micromirror devices. Journal of Astronomical Telescopes, Instruments, and Systems. 6. 10.1117/1.JATIS.6.4.045006, 18 December 2020.

Miller, C. W., Zwickl, B. M., Posselt, J. R., Silvestrini, R. T., and Hodapp, T., 2020. Response to Comments Typical physics Ph. D. admissions criteria limit access to underrepresented groups but fail to predict doctoral completion. Science Advances, 5(1), eaat7550.

Liu, C., Melanson, B., and Zhang, J., 2020, AlGaN-Delta-GaN Quantum Well for DUV LEDs. In Photonics (Vol. 7, No. 4, p. 87). Multidisciplinary Digital Publishing Institute.

Liu, Cheng, and Zhang, Jing, 2020, Physics of high-efficiency 240–260 nm deep-ultraviolet lasers and light-emitting diodes on AlGaN substrate. Journal of Applied Physics, 127(20), 205702.

2019

Hach III, Edwin, 2019, Linear optical quantum information processing in silicon nanophotonics, Proc. SPIE 11917, Photonics for Quantum 2019, 1191706, 27 August 2021.

Howland, Gregory, 2019, Efficiently certifying large amounts of entanglement in high-dimensional quantum systems, Proc. SPIE 11917, Photonics for Quantum 2019, 119170X, 27 August 2021.

Preble, Stefan, 2019, Quantum integrated photonics, Proc. SPIE 11917, Photonics for Quantum 2019, 119170A, 27 August 2021.

Zwickl, B., Wysocki, B., Dudley, E., Soltani, M., Tongue, T., and Anant, V., 2019, Career and Education Panel, Proc. SPIE 11917, Photonics for Quantum 2019, 119170C,27 August 2021

Fanto, Mike, 2019, Quantum Integrated Photonics Panel, Proc. SPIE 11917, Photonics for Quantum 2019, 119170O, 27 August 2021.