Publications

2025

Chichester, C. C., Yamakuchi, M.,Takenouchi, K., Hashiguchi, T., and Maywar, D. N. 2025, Analytical Basal-State Model of the Glucose, Insulin, and C-Peptide Systems for Type 2 Diabetes, MDPI, Bioengineering, 12(5), 553, https://doi.org/10.3390/bioengineering12050553, 21 May 2025.

Khanal, B. 2025, Towards Robust Deep Learning for Medical Imaging With Limited and Noisy Labeled Data, Rochester Institute of Technology ProQuest Dissertations & Theses, Order No. 32038590, Rochester Institute of Technology, NY, USA, 19 May 2025. 

Legault, A., Alexani, E., Castellanos, R., Evans, C. Figer, D. F., Fullerton, A. W., Garcia, M., Herrero, A., Hillier, D. J., Lennon, D. J., Najarro, P., Negueruela, I., Patrick, L., Puls, J., Rodriguez Del Pino, B., Schoedel, R., and Tramper, F., 2025, Dissecting the Arches cluster: An ideal test bed to study the metal-rich Universe, JWST Proposal. Cycle 4, ID. #7169, 11 March 2025. 

Khanal, B., Pokhrel, S., Bhandari, S., Rana, R., Shrestha, N., Gurung, R. B., Linte, C., Watson, A., Shrestha, Y. R., and Bhattarai B. 2025, Hallucination-Aware Multimodal Benchmark for Gastrointestinal Image Analysis with Large Vision-Language Models, arXiv:2505.07001v1, cs.CV, https://doi.org/10.48550/arXiv.2505.07001, 11 May 2025.

Odden, T. O. B., and Zwickl, B. 2025, How physics students build computational literacy by creating computational literature, Journal of the Learning Sciences, Taylor & Francis Group, LLC​​​​​​​, https://doi.org/10.1080/10508406.2025.2494791, 2 May 2025.

2024

Verostek, M., Miller, C. W. and Zwickl, B. M. 2024, Alleviating the Stress of Finding a PhD Advisor, American Physical Society, Physics Magazine, DOI: 10.1103/Physics.17.76.

Zwickl, Benjamin M., Verostek, Mike, Miller, Casey W. 2024, Modeling when and how physics PhD students search for a research group: the role of interests and prior research experiences in timely group integration, https://arxiv.org/pdf/2404.11580.pdf, 23 April 2024.

Zhang, K., Xiao, K., Luntz-Martin, D., Sun, P., Sharma, S., Bhattacharya, M., and Vamivakas, A. N. 2024, Coherent control of an optical tweezer phonon laser, Opt. Express, 32, 14735-14745, https://doi.org/10.1364/OE.511600, 8 April 2024.

Kundu, Bipasha, Yang, Zixin, Simon, Richard, and Linte, Cristian 2024, Comparative analysis of non-rigid registration techniques for liver surface registration, Proc. SPIE 12928, Medical Imaging 2024: Image-Guided Procedures, Robotic Interventions, and Modeling, 129282B, https://doi.org/10.1117/12.3008594, 29 March 2024.

Silich, E. M., Bellomi, E., Sayers, J., ZuHone, J., Chadayammuri, U., Golwala, S., Hughes, D., Montaña, A., Mroczkowski, T., Nagai, D., Sánchez, D., Stanford, S. A., Wilson, G., Zemcov, M., and Zitrin, A. 2024, Improved Constraints on Mergers with SZ, Hydrodynamical simulations, Optical, and X-ray (ICM-SHOX), Paper II: Galaxy cluster sample overview, EPJ Web of Conferences 293, EDP Sciences, https://doi.org/10.1051/epjconf/202429300050, 28 March 2024.

2023

Khanal, B., Bhattarai, B., Khanal, B., Stoyanov, D., and Linte, C. A. 2023, M-VAAL: Multimodal Variational Adversarial Active Learning for Downstream Medical Image Analysis Tasks, arXiv:2306.12376v1, 21 Jun 2023.

Polly, Stephen, Bogner, Brandon, Fedorenko, Anastasiia, Phokharel, Nikhil, Ahrenkiel, Phil, Chowdhury, Subhra, Biswas, Dhrubes, Hubbard, Seth 2023, Growth optimization of quantum-well-enhanced multijunction photovoltaics, Cell Reports Physical Science 4, 101432. 21 June 2023

Upendra, Roshan R., Simon, Richard, Shontz, Suzanne M., and Linte, Cristian A. 2023, Deformable Image Registration Using Vision Transformers for Cardiac Motion Estimation from Cine Cardiac MRI Images, International Conference on Functional Imaging and Modeling of the Heart, 16 June 2023.

Pradhan, Nalinikanta, Kumar, Pardeep, Kanamoto, Rina, Dey, Tarak N., Bhattacharya, M., and Mishra, Pankaj K. 2023, Cavity optomechanical detection of persistent currents and solitons in a bosonic ring condensate, arXiv:2306.06720v1, 11 June 2023.

Mainali, Madan K., Subedi, Indra, Forbes, David V., Hubbard, Seth M., and Poddrazam, Nikolas J. 2023, Optical and electronic transport properties of epitaxial InGaAs and InAlAs in multilayer stacks, Journal of Materials Science, Springer US, Pages 1-14. 07 June 2023

2022

Kabir, Muhammad Salahuddin, Powell, Eli, Manley, Robert G., and Hirschman, Karl D. 2022, Intrinsic Channel Mobility Associated with Extended State transport in IGZO TFTs,ECS Transactions, Volume 109, Number 6. 30 September 2022

Harris, Jerry D., Wade, Emily A., Elison, Emmaline G., Pena, Cecelia C., Hubbard, Seth M., et al. 2022, Zinc-Acetate-Amine Complexes as Precursors to ZnO and the Effect of the Amine on Nanoparticle Morphology, Size, and Photocatalytic Activity, MDPI, Structured Semiconductors in Photocatalysis, Volume 12, Issue 10, Pages: 1099. 23 September 2022.

Verostek, Michael, Griston, Molly, Botello, Jesus, and Zwickl, Benjamin M. 2022, Making expert cognitive processes visible: planning and preliminary analysis in theoretical physics research, Physics Education Research Conference NSF: 10409048. 22 September 2022

Flores, Mark, Verchimak, Rebecca, Zohrabi Alaee, Dina, and Zwickl, Benjamin M. 2022, Factors influencing help seeking and help avoidant behaviors among physics and life science majors, Physics Education Research Conference, NSF: 1049047. 22 September 2022

Polly, Stephen, Bogner, Brandon, Fedorenko, Anastasiia, Pokharel, Nikhil, and Hubbard, Seth M. 2022, Growth Optimization of InGaP/GaAs Dual Junction Solar Cells With Quantum Wells and a Distributed Bragg Reflector, Cell Reports Physical Science. 14 September 2022

2021

Bhattacharya, Mishkatul, and Vamivakas, Anthony Nickolas, 2021, Optical Tweezer Phonon Laser, US20210358651A1 18 November 2021

Sejpala, Rajiv, and Smith, Bruce 2021, Identifying extreme ultraviolet lithography attenuated phase shifting mask absorber materials using effective media approximation modeling, Journal of Vacuum Science & Technology B 39, 062604. 16 November 2021

Serafini, J., van Niekerk, M., Fanto, M., and Preble, S. 2021, Tunable, High Purity Two-Photon Interference From Independent Sources On a Silicon Photonic Chip, 2021 IEEE Photonics Conference (IPC), pp. 1-2, doi: 10.1109/IPC48725.2021.9593082, 12 November 2021.

Al Graiti, Saif A., Maywar, and Drew N. 2021, Optical-hysteresis shape transformation using linear polarization components, The Journal of the Optical Society of America B, 11 November 2021.

Swain, Biswa R., Dorrer, Christophe, and Qiao, Jie 2021 Telephoto-lens-based Optical Differentiation Wavefront Sensor for freeform metrology, Opt. Express 29, 38395-38403, 3 November 2021.

2020

Liu, Dawei, Dangi, Shusil, Schwarz, Karl Q., Linte, Cristian A., 2020 "Combining statistical shape model and principal component analysis to estimate left ventricular volume and ejection fraction" SPIE Medical Imaging, 2020, Houston, Texas, United States

Owens, L., Zwickl, B. M., Franklin, S. V., and Miller, C. W., 2020, Identifying qualities of physics graduate students valued by faculty. In Physics Education Research Conference 2019, 9 January 2020.

Fox, M. F., Zwickl, B. M., and Lewandowski, H. J., 2020. Preparing for the quantum revolution: What is the role of higher education?. Physical Review Physics Education Research, 16(2), 020131.

Duivenvoorden, S., Oliver, S., Scudder, J. M., Greenslade, J., Riechers, D. A., Wilkins, S. M., ... and Zemcov, M., 2020. VizieR Online Data Catalog: SCUBA-2 850um obs. of Herschel gal.(Duivenvoorden+, 2018). VizieR Online Data Catalog, J-MNRAS, April 2020.

Polly, Stephen J., Welser, Roger E., Kacharia, Mitsul, Fedorenko, Anastasiia, Sood, Ashok K., Hubbard, Seth M., 2020 "Quantum well solar cells incorporating thin barriers for improved efficiency (Conference Presentation)" Proc. SPIE 11275, Physics, Simulation, and Photonic Engineering of Photovoltaic Devices IX, 112750O

2019

Hach III, Edwin, 2019, Linear optical quantum information processing in silicon nanophotonics, Proc. SPIE 11917, Photonics for Quantum 2019, 1191706, 27 August 2021.

Howland, Gregory, 2019, Efficiently certifying large amounts of entanglement in high-dimensional quantum systems, Proc. SPIE 11917, Photonics for Quantum 2019, 119170X, 27 August 2021.

Preble, Stefan, 2019, Quantum integrated photonics, Proc. SPIE 11917, Photonics for Quantum 2019, 119170A, 27 August 2021.

Zwickl, B., Wysocki, B., Dudley, E., Soltani, M., Tongue, T., and Anant, V., 2019, Career and Education Panel, Proc. SPIE 11917, Photonics for Quantum 2019, 119170C,27 August 2021

Fanto, Mike, 2019, Quantum Integrated Photonics Panel, Proc. SPIE 11917, Photonics for Quantum 2019, 119170O, 27 August 2021.