Publications

2025

Khanal, B. 2025, Towards Robust Deep Learning for Medical Imaging With Limited and Noisy Labeled Data, Rochester Institute of Technology ProQuest Dissertations & Theses, Order No. 32038590, Rochester Institute of Technology, NY, USA, 19 May 2025. 

Legault, A., Alexani, E., Castellanos, R., Evans, C. Figer, D. F., Fullerton, A. W., Garcia, M., Herrero, A., Hillier, D. J., Lennon, D. J., Najarro, P., Negueruela, I., Patrick, L., Puls, J., Rodriguez Del Pino, B., Schoedel, R., and Tramper, F., 2025, Dissecting the Arches cluster: An ideal test bed to study the metal-rich Universe, JWST Proposal. Cycle 4, ID. #7169, 11 March 2025. 

Khanal, B., Pokhrel, S., Bhandari, S., Rana, R., Shrestha, N., Gurung, R. B., Linte, C., Watson, A., Shrestha, Y. R., and Bhattarai B. 2025, Hallucination-Aware Multimodal Benchmark for Gastrointestinal Image Analysis with Large Vision-Language Models, arXiv:2505.07001v1, cs.CV, https://doi.org/10.48550/arXiv.2505.07001, 11 May 2025.

Odden, T. O. B., and Zwickl, B. 2025, How physics students build computational literacy by creating computational literature, Journal of the Learning Sciences, Taylor & Francis Group, LLC​​​​​​​, https://doi.org/10.1080/10508406.2025.2494791, 2 May 2025.

Pina, A. R., El-Adawy, S., Verostek, M., Lewandowski, H. J., Zwickl, B. M. 2025, Investigating Opportunities for Growth and Increased Diversity in Quantum Information Science and Engineering Education in the U.S. based on an Analysis of the Current Educational Landscape, physics.ed-ph, arXiv:2505.00104v1, 30 Apr 2025.

2024

Verostek, M., Miller, C. W. and Zwickl, B. M. 2024, Alleviating the Stress of Finding a PhD Advisor, American Physical Society, Physics Magazine, DOI: 10.1103/Physics.17.76.

Zwickl, Benjamin M., Verostek, Mike, Miller, Casey W. 2024, Modeling when and how physics PhD students search for a research group: the role of interests and prior research experiences in timely group integration, https://arxiv.org/pdf/2404.11580.pdf, 23 April 2024.

Zhang, K., Xiao, K., Luntz-Martin, D., Sun, P., Sharma, S., Bhattacharya, M., and Vamivakas, A. N. 2024, Coherent control of an optical tweezer phonon laser, Opt. Express, 32, 14735-14745, https://doi.org/10.1364/OE.511600, 8 April 2024.

Kundu, Bipasha, Yang, Zixin, Simon, Richard, and Linte, Cristian 2024, Comparative analysis of non-rigid registration techniques for liver surface registration, Proc. SPIE 12928, Medical Imaging 2024: Image-Guided Procedures, Robotic Interventions, and Modeling, 129282B, https://doi.org/10.1117/12.3008594, 29 March 2024.

Silich, E. M., Bellomi, E., Sayers, J., ZuHone, J., Chadayammuri, U., Golwala, S., Hughes, D., Montaña, A., Mroczkowski, T., Nagai, D., Sánchez, D., Stanford, S. A., Wilson, G., Zemcov, M., and Zitrin, A. 2024, Improved Constraints on Mergers with SZ, Hydrodynamical simulations, Optical, and X-ray (ICM-SHOX), Paper II: Galaxy cluster sample overview, EPJ Web of Conferences 293, EDP Sciences, https://doi.org/10.1051/epjconf/202429300050, 28 March 2024.

2023

Khanal, B., Bhattarai, B., Khanal, B., Stoyanov, D., and Linte, C. A. 2023, M-VAAL: Multimodal Variational Adversarial Active Learning for Downstream Medical Image Analysis Tasks, arXiv:2306.12376v1, 21 Jun 2023.

Polly, Stephen, Bogner, Brandon, Fedorenko, Anastasiia, Phokharel, Nikhil, Ahrenkiel, Phil, Chowdhury, Subhra, Biswas, Dhrubes, Hubbard, Seth 2023, Growth optimization of quantum-well-enhanced multijunction photovoltaics, Cell Reports Physical Science 4, 101432. 21 June 2023

Upendra, Roshan R., Simon, Richard, Shontz, Suzanne M., and Linte, Cristian A. 2023, Deformable Image Registration Using Vision Transformers for Cardiac Motion Estimation from Cine Cardiac MRI Images, International Conference on Functional Imaging and Modeling of the Heart, 16 June 2023.

Pradhan, Nalinikanta, Kumar, Pardeep, Kanamoto, Rina, Dey, Tarak N., Bhattacharya, M., and Mishra, Pankaj K. 2023, Cavity optomechanical detection of persistent currents and solitons in a bosonic ring condensate, arXiv:2306.06720v1, 11 June 2023.

Mainali, Madan K., Subedi, Indra, Forbes, David V., Hubbard, Seth M., and Poddrazam, Nikolas J. 2023, Optical and electronic transport properties of epitaxial InGaAs and InAlAs in multilayer stacks, Journal of Materials Science, Springer US, Pages 1-14. 07 June 2023

2022

Dorman, Kyle R., Whiteside, Vincent R., Ferry, David K., Yusuf, Israa G., Hubbard, Seth M., and Sellers, Ian R. 2022, Toward Hot Carrier Extraction in Intervalley Photovoltaic Devices, ACS Appl. Energy Mater. 2022, Volume 5, Issue 9, pp. 11159-11166. 13 September 2022

Simon, Richard, Mehta, Nishaki K., Shah, Kuldeep B., Haines, David E., and Linte, Cristian A. 2022, Toward a Quasi-dynamic Pulsed Field Electroporation Numerical Model for Cardiac Ablation: Predicting Tissue Conductance Changes and Ablation Lesion Patterns, 2022 Computing in Cardiology, Tampere, Finland, pp. 1-4. 04 September 2022

Travouillon, T., Figer, D. F., Kasliwal, M., and Moore, A. M., Guillot, T. 2023, Ultra Wide-Field Infrared Astronomy in Antarctica, Scientific Detector Workshop, Potsdam. 04 September 2022

Ben-Zikri, Yehuda K., Helguera, Maria, Fetzer, David, Shrier, David A., and Linte, Cristian A., 2022, A feature affine registration method for capturing background lung tissue deformation for ground glass nodule tracking, Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, Volume 10, Issue 5, pp. 521-539. 03 September 2022

Alaee, Dina Zohrabi, and Zwickl, Benjamin M. 2022, A qualitative analysis of concept maps through the Research Experiences for Undergraduates (REU) programs, Proceedings of the Physics Education Research Conference (PERC). ISSN: 1539-9028. 01 September 2022

2021

Borasi, Raffaella, DeMartino, Richard, Harris, Nathan and Miller, Dave 2021, Could COVID-19 be a Catalyst for Disruption in Higher Education?. 10.4324/9781003125921-15, 23 August 2021.

Griston, Molly, Botello, Jesus, Verostek, Michael, and Zwickl, Benjamin 2021, When the light bulb turns on: motivation and collaboration spark the creation of ideas for theoretical physicists. 160-165. 10.1119/perc.2021.pr.Griston. 18 August 2021

Zohrabi, Alaee, Dina, Campbell, Micah K., Zwickl, Benjamin M., 2021, Impact of virtual REU experiences on students' psychosocial gains during the COVID-19 pandemic, eprint arXiv:2108.07620, 17 August 2021

Kesgin, M., Taheri, B., Murthy, R. S., Decker, J. and Gannon, M. J. 2021, Making memories: a consumer-based model of authenticity applied to living history sites, International Journal of Contemporary Hospitality Management, Vol. 33 No. 10, pp. 3610-3635, 16 August 2021. 

Verostek, Michael, Miller, Casey, and Zwickl, Benjamin 2021, Time to PhD completion is no different between men and women despite score gap on physics GRE. 414-419. 10.1119/perc.2021.pr.Verostek. 12 August 2021

2020

Liu, Dawei, Dangi, Shusil, Schwarz, Karl Q., Linte, Cristian A., 2020 "Combining statistical shape model and principal component analysis to estimate left ventricular volume and ejection fraction" SPIE Medical Imaging, 2020, Houston, Texas, United States

Owens, L., Zwickl, B. M., Franklin, S. V., and Miller, C. W., 2020, Identifying qualities of physics graduate students valued by faculty. In Physics Education Research Conference 2019, 9 January 2020.

Fox, M. F., Zwickl, B. M., and Lewandowski, H. J., 2020. Preparing for the quantum revolution: What is the role of higher education?. Physical Review Physics Education Research, 16(2), 020131.

Duivenvoorden, S., Oliver, S., Scudder, J. M., Greenslade, J., Riechers, D. A., Wilkins, S. M., ... and Zemcov, M., 2020. VizieR Online Data Catalog: SCUBA-2 850um obs. of Herschel gal.(Duivenvoorden+, 2018). VizieR Online Data Catalog, J-MNRAS, April 2020.

Polly, Stephen J., Welser, Roger E., Kacharia, Mitsul, Fedorenko, Anastasiia, Sood, Ashok K., Hubbard, Seth M., 2020 "Quantum well solar cells incorporating thin barriers for improved efficiency (Conference Presentation)" Proc. SPIE 11275, Physics, Simulation, and Photonic Engineering of Photovoltaic Devices IX, 112750O

2019

Hach III, Edwin, 2019, Linear optical quantum information processing in silicon nanophotonics, Proc. SPIE 11917, Photonics for Quantum 2019, 1191706, 27 August 2021.

Howland, Gregory, 2019, Efficiently certifying large amounts of entanglement in high-dimensional quantum systems, Proc. SPIE 11917, Photonics for Quantum 2019, 119170X, 27 August 2021.

Preble, Stefan, 2019, Quantum integrated photonics, Proc. SPIE 11917, Photonics for Quantum 2019, 119170A, 27 August 2021.

Zwickl, B., Wysocki, B., Dudley, E., Soltani, M., Tongue, T., and Anant, V., 2019, Career and Education Panel, Proc. SPIE 11917, Photonics for Quantum 2019, 119170C,27 August 2021

Fanto, Mike, 2019, Quantum Integrated Photonics Panel, Proc. SPIE 11917, Photonics for Quantum 2019, 119170O, 27 August 2021.