Publications

2025

Chichester, C. C., Yamakuchi, M.,Takenouchi, K., Hashiguchi, T., and Maywar, D. N. 2025, Analytical Basal-State Model of the Glucose, Insulin, and C-Peptide Systems for Type 2 Diabetes, MDPI, Bioengineering, 12(5), 553, https://doi.org/10.3390/bioengineering12050553, 21 May 2025.

Khanal, B. 2025, Towards Robust Deep Learning for Medical Imaging With Limited and Noisy Labeled Data, Rochester Institute of Technology ProQuest Dissertations & Theses, Order No. 32038590, Rochester Institute of Technology, NY, USA, 19 May 2025. 

Legault, A., Alexani, E., Castellanos, R., Evans, C. Figer, D. F., Fullerton, A. W., Garcia, M., Herrero, A., Hillier, D. J., Lennon, D. J., Najarro, P., Negueruela, I., Patrick, L., Puls, J., Rodriguez Del Pino, B., Schoedel, R., and Tramper, F., 2025, Dissecting the Arches cluster: An ideal test bed to study the metal-rich Universe, JWST Proposal. Cycle 4, ID. #7169, 11 March 2025. 

Khanal, B., Pokhrel, S., Bhandari, S., Rana, R., Shrestha, N., Gurung, R. B., Linte, C., Watson, A., Shrestha, Y. R., and Bhattarai B. 2025, Hallucination-Aware Multimodal Benchmark for Gastrointestinal Image Analysis with Large Vision-Language Models, arXiv:2505.07001v1, cs.CV, https://doi.org/10.48550/arXiv.2505.07001, 11 May 2025.

Odden, T. O. B., and Zwickl, B. 2025, How physics students build computational literacy by creating computational literature, Journal of the Learning Sciences, Taylor & Francis Group, LLC​​​​​​​, https://doi.org/10.1080/10508406.2025.2494791, 2 May 2025.

2024

Verostek, M., Miller, C. W. and Zwickl, B. M. 2024, Alleviating the Stress of Finding a PhD Advisor, American Physical Society, Physics Magazine, DOI: 10.1103/Physics.17.76.

Zwickl, Benjamin M., Verostek, Mike, Miller, Casey W. 2024, Modeling when and how physics PhD students search for a research group: the role of interests and prior research experiences in timely group integration, https://arxiv.org/pdf/2404.11580.pdf, 23 April 2024.

Zhang, K., Xiao, K., Luntz-Martin, D., Sun, P., Sharma, S., Bhattacharya, M., and Vamivakas, A. N. 2024, Coherent control of an optical tweezer phonon laser, Opt. Express, 32, 14735-14745, https://doi.org/10.1364/OE.511600, 8 April 2024.

Kundu, Bipasha, Yang, Zixin, Simon, Richard, and Linte, Cristian 2024, Comparative analysis of non-rigid registration techniques for liver surface registration, Proc. SPIE 12928, Medical Imaging 2024: Image-Guided Procedures, Robotic Interventions, and Modeling, 129282B, https://doi.org/10.1117/12.3008594, 29 March 2024.

Silich, E. M., Bellomi, E., Sayers, J., ZuHone, J., Chadayammuri, U., Golwala, S., Hughes, D., Montaña, A., Mroczkowski, T., Nagai, D., Sánchez, D., Stanford, S. A., Wilson, G., Zemcov, M., and Zitrin, A. 2024, Improved Constraints on Mergers with SZ, Hydrodynamical simulations, Optical, and X-ray (ICM-SHOX), Paper II: Galaxy cluster sample overview, EPJ Web of Conferences 293, EDP Sciences, https://doi.org/10.1051/epjconf/202429300050, 28 March 2024.

2023

Khanal, B., Bhattarai, B., Khanal, B., Stoyanov, D., and Linte, C. A. 2023, M-VAAL: Multimodal Variational Adversarial Active Learning for Downstream Medical Image Analysis Tasks, arXiv:2306.12376v1, 21 Jun 2023.

Polly, Stephen, Bogner, Brandon, Fedorenko, Anastasiia, Phokharel, Nikhil, Ahrenkiel, Phil, Chowdhury, Subhra, Biswas, Dhrubes, Hubbard, Seth 2023, Growth optimization of quantum-well-enhanced multijunction photovoltaics, Cell Reports Physical Science 4, 101432. 21 June 2023

Upendra, Roshan R., Simon, Richard, Shontz, Suzanne M., and Linte, Cristian A. 2023, Deformable Image Registration Using Vision Transformers for Cardiac Motion Estimation from Cine Cardiac MRI Images, International Conference on Functional Imaging and Modeling of the Heart, 16 June 2023.

Pradhan, Nalinikanta, Kumar, Pardeep, Kanamoto, Rina, Dey, Tarak N., Bhattacharya, M., and Mishra, Pankaj K. 2023, Cavity optomechanical detection of persistent currents and solitons in a bosonic ring condensate, arXiv:2306.06720v1, 11 June 2023.

Mainali, Madan K., Subedi, Indra, Forbes, David V., Hubbard, Seth M., and Poddrazam, Nikolas J. 2023, Optical and electronic transport properties of epitaxial InGaAs and InAlAs in multilayer stacks, Journal of Materials Science, Springer US, Pages 1-14. 07 June 2023

2022

Spaulding, Carolyn, Taylor, Alex, Williams, Scott, Packard, Glenn, and, Kurinec, Santosh 2022, Introducing gallium in silicon and thin film polysilicon using self assembled monolayer doping, Materials Letters, Volume 325. 14 July 2022

Kamrul Hasan, S. M., and Linte, Cristian A. 2022, Joint Segmentation and uncertainty Estimation of Ventricular Structures from Cardiac MRI using a Bayesian CondenseUNet, 2022 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC) 11 July 2022

Upendra, Roshan Reddy, and Linte, Cristian A. 2022, A 3D Convolutional Neural Network with Gradient Guidance for Image Super-Resolution of Late Gadolinium Enhanced cardiac MRI, 2022 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), Glasgow, Scotland, United Kingdom, 2022, pp. 1707-1710 11 July 2022

Jackson, Peter, Merrell, Kelly, Simon, Richard, and Linte, Cristian A. 2022, Investigating uncertainty in augmented reality enhanced renal navigation using in vitro patient-specific tissue-mimicking phantoms, 2022 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), Glasgow, Scotland, United Kingdom, pp.2997-3002. 11 July 2022

Yang, Zixin, Lin, Shan, Simon, Richard, and Linte, Cristian A. 2022, Endoscope Localization and Dense Surgical Scene Reconstruction for Stereo Endoscopy by Unsupervised Optical Flow and Kanade-Lucas-Tomasi Tracking, 2022 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), Glasgow, Scotland, United Kingdom, pp. 4839-4842. 11 July 2022

2021

Yang, Zixin, Simon, Richard, Li, Yangming, and Linte, Cristian A. 2021, Dense Depth Estimation from Stereo Endoscopy Videos Using Unsupervised Optical Flow Methods, Medical Image Understanding and Analysis. MIUA 2021. Lecture Notes in Computer Science, vol 12722, 6 July 2021.

Hasan, Nazmul M. D., Zheng, Yixiong, Lai, Junyu, Mohseni, Parsian K., Seo, Jung-Hun, et al. 2021, Electrical and Thermal Property of Si/GaAs Heterojunction Formed by Ultra-Thin Oxide Interfacial Layer, arXiv, eprint arXiv:2107.06983, 01 July 2021

Sun, G., Chang, T. C., Uzgil, B. D., Bock, J. J., Bradford, C. M., Butler, V., Caze-Cortes, T., Cheng, Y. T., Cooray, A. 2021, Probing Cosmic Reionization and Molecular Gas Growth with TIME, The Astrophysical Journal, Volume 915, Number 1, 01 July 2021.

Swain, Biswa R., Dorrer, Christophe, and Qiao, Jie 2021, Telephoto-Based Optical Differentiation Wavefront Sensor and Alignment Tolerance for Freeform Metrology, Optical Society of America, Optical Fabrication and Testing, Pages OM3B. 4, 27 June 2021.

Birrittella, Richard J., Ziskind, Jason, Hach, Edwin E., Alsing, Paul M., and Gerry, Christopher C. 2021, Optimal spin- and planar-quantum squeezing in superpositions of spin coherent states, eprint arXiv:2106.04430. 25 June 2021

2020

D’Rozario, J. R., Polly, S. J., Nelson, G. T., and Hubbard, S. M., 2020, "Thin Gallium Arsenide Solar Cells With Maskless Back Surface Reflectors," in IEEE Journal of Photovoltaics, vol. 10, no. 6, pp. 1681-1688, doi: 10.1109/JPHOTOV.2020.3019950, 10 September 2020.

D'Rozario, J. R., Polly, S. J., Nelson, G. T., Mohseni, P. K., Hubbard, S. M. et al., 2020, "Back Surface Reflectors for Thin III-V Multi-junction Space Photovoltaics," 2020 47th IEEE Photovoltaic Specialists Conference (PVSC), 2020, pp. 1686-1688, doi: 10.1109/PVSC45281.2020.9300732, 05 January 2021.

Woeppel, Aaron, Xu, Ke, Kozhakhmetov, Azimkhan, Awate, Shubham, Robinson, Joshua A., Fullerton-Shirey, Susan K., 2020 "Single -versus Dual-Ion Conductors for Electric Double Layer Gating: Finite Element Modeling and Hall-Effect Measurements" ACS Appl. Mater. Interfaces, Volume 12, Number 36

Lin, Yu-Chuan, Bersch, Brian M., Addou, Rafik, Xu, Ke, Wang, Qingxiao, Smyth, Chirstopher M., Jariwala, Bhakti, Walker II, Roger C., Fullerton-Shirey, Susan K., Kim, Moon J., Wallace, Robert M., Robinson, Joshua A., 2020 "Modification of the Electronic Transport in Atomically Thin WSe2 by Oxidation" Advanced Materials Interfaces, Volume 7, Issue 18, 2000422

Syamlal, Madhava, Xu, Ke, and 17 others "Fossil Energy Workshop on Quantum Information Science & Technology Summary Report" National Energy Technology Laboratory, Issue 0553a49b-282c-46ee-aff7-fa37b749ad3e

2019

Arteaga-Sierra, F. R., Feng, T., Dorrer, C. and Qiao, J., 2019, Nonlinear Optical Dynamics in Femtosecond Laser Processing of Nd:YAG Waveguides 2019 Conference on Lasers and Electro-Optics Europe & European Quantum Electronics Conference, pp. 1-1, 10.1109, 17 October 2019.

Beichman, C., Zemcov, M. B., Lisse, C. M., Bock, J. A., Brandt, P. C., Horanyi, M., McNutt, R. L., Poppe, A. R., Paul, M. V., Sterken, V. J., and Szalay, J. R., 2019, Measuring the Extragalactic Background Light With an Interstellar Probe, AGU Fall Meeting Abstracts, 2019, SH54A-10, December 2019.

Burns, E., and 1163 colleagues, 2019, A Fermi Gamma-Ray Burst Monitor Search for Electromagnetic Signals Coincident with Gravitational-wave Candidates in Advanced LIGO's First Observing Run, The Astrophysical Journal, 871, 90, 24 January 2019.

Chang, Tzu-Ching, Zemcov, Michael, and 42 colleagues 2019, Tomography of the Cosmic Dawn and Reionization Eras with Multiple Tracers, Bulletin of the American Astronomical Society, 51, 282, 28 Mar 2019.

Mroczkowski, Tony, Zemcov, Michael and 34 colleagues, 2019, A High-resolution SZ View of the Warm-Hot Universe, Bulletin of the American Astronomical Society, 51, 124, May 2019.