Publications

2025

Khanal, B. 2025, Towards Robust Deep Learning for Medical Imaging With Limited and Noisy Labeled Data, Rochester Institute of Technology ProQuest Dissertations & Theses, Order No. 32038590, Rochester Institute of Technology, NY, USA, 19 May 2025. 

Legault, A., Alexani, E., Castellanos, R., Evans, C. Figer, D. F., Fullerton, A. W., Garcia, M., Herrero, A., Hillier, D. J., Lennon, D. J., Najarro, P., Negueruela, I., Patrick, L., Puls, J., Rodriguez Del Pino, B., Schoedel, R., and Tramper, F., 2025, Dissecting the Arches cluster: An ideal test bed to study the metal-rich Universe, JWST Proposal. Cycle 4, ID. #7169, 11 March 2025. 

Khanal, B., Pokhrel, S., Bhandari, S., Rana, R., Shrestha, N., Gurung, R. B., Linte, C., Watson, A., Shrestha, Y. R., and Bhattarai B. 2025, Hallucination-Aware Multimodal Benchmark for Gastrointestinal Image Analysis with Large Vision-Language Models, arXiv:2505.07001v1, cs.CV, https://doi.org/10.48550/arXiv.2505.07001, 11 May 2025.

Odden, T. O. B., and Zwickl, B. 2025, How physics students build computational literacy by creating computational literature, Journal of the Learning Sciences, Taylor & Francis Group, LLC​​​​​​​, https://doi.org/10.1080/10508406.2025.2494791, 2 May 2025.

Pina, A. R., El-Adawy, S., Verostek, M., Lewandowski, H. J., Zwickl, B. M. 2025, Investigating Opportunities for Growth and Increased Diversity in Quantum Information Science and Engineering Education in the U.S. based on an Analysis of the Current Educational Landscape, physics.ed-ph, arXiv:2505.00104v1, 30 Apr 2025.

2024

Verostek, M., Miller, C. W. and Zwickl, B. M. 2024, Alleviating the Stress of Finding a PhD Advisor, American Physical Society, Physics Magazine, DOI: 10.1103/Physics.17.76.

Zwickl, Benjamin M., Verostek, Mike, Miller, Casey W. 2024, Modeling when and how physics PhD students search for a research group: the role of interests and prior research experiences in timely group integration, https://arxiv.org/pdf/2404.11580.pdf, 23 April 2024.

Zhang, K., Xiao, K., Luntz-Martin, D., Sun, P., Sharma, S., Bhattacharya, M., and Vamivakas, A. N. 2024, Coherent control of an optical tweezer phonon laser, Opt. Express, 32, 14735-14745, https://doi.org/10.1364/OE.511600, 8 April 2024.

Kundu, Bipasha, Yang, Zixin, Simon, Richard, and Linte, Cristian 2024, Comparative analysis of non-rigid registration techniques for liver surface registration, Proc. SPIE 12928, Medical Imaging 2024: Image-Guided Procedures, Robotic Interventions, and Modeling, 129282B, https://doi.org/10.1117/12.3008594, 29 March 2024.

Silich, E. M., Bellomi, E., Sayers, J., ZuHone, J., Chadayammuri, U., Golwala, S., Hughes, D., Montaña, A., Mroczkowski, T., Nagai, D., Sánchez, D., Stanford, S. A., Wilson, G., Zemcov, M., and Zitrin, A. 2024, Improved Constraints on Mergers with SZ, Hydrodynamical simulations, Optical, and X-ray (ICM-SHOX), Paper II: Galaxy cluster sample overview, EPJ Web of Conferences 293, EDP Sciences, https://doi.org/10.1051/epjconf/202429300050, 28 March 2024.

2023

Khanal, B., Bhattarai, B., Khanal, B., Stoyanov, D., and Linte, C. A. 2023, M-VAAL: Multimodal Variational Adversarial Active Learning for Downstream Medical Image Analysis Tasks, arXiv:2306.12376v1, 21 Jun 2023.

Polly, Stephen, Bogner, Brandon, Fedorenko, Anastasiia, Phokharel, Nikhil, Ahrenkiel, Phil, Chowdhury, Subhra, Biswas, Dhrubes, Hubbard, Seth 2023, Growth optimization of quantum-well-enhanced multijunction photovoltaics, Cell Reports Physical Science 4, 101432. 21 June 2023

Upendra, Roshan R., Simon, Richard, Shontz, Suzanne M., and Linte, Cristian A. 2023, Deformable Image Registration Using Vision Transformers for Cardiac Motion Estimation from Cine Cardiac MRI Images, International Conference on Functional Imaging and Modeling of the Heart, 16 June 2023.

Pradhan, Nalinikanta, Kumar, Pardeep, Kanamoto, Rina, Dey, Tarak N., Bhattacharya, M., and Mishra, Pankaj K. 2023, Cavity optomechanical detection of persistent currents and solitons in a bosonic ring condensate, arXiv:2306.06720v1, 11 June 2023.

Mainali, Madan K., Subedi, Indra, Forbes, David V., Hubbard, Seth M., and Poddrazam, Nikolas J. 2023, Optical and electronic transport properties of epitaxial InGaAs and InAlAs in multilayer stacks, Journal of Materials Science, Springer US, Pages 1-14. 07 June 2023

2022

Panuski, Christopher, Christen, Ian, and Minkov, Momchil, 2022, A full degree-of-freedom photonic crystal spatial light modulator, eprint arXiv:2204.10302v1. 21 April 2022

Sun, Fengwu, Egami, Eiichii, and Fujimoto, Seiji, 2022, ALMA Lensing Cluster Survey: ALMA-Herschel Joint Study of Lensed Dusty Star-Forming Galaxies across z ' 0.5 − 6, eprint arXiv:2204.07187v1. 18 April 2022 

Siewerdsen, Jeffrey H., and Linte, Cristian A. 2022, SPIE Medical Imaging 50th anniversary: historical review of the Image-Guided Procedures, Robotic Interventions, and Modeling conference, J. Med. Imag. 9(S1) 012206. 18 April 2022 

Deng, Shan, Ni, Kai, and Kurinec, Santosh K. 2022, Test measurements for Charge Trapping in Different Polarization Ferroelectric FETs, IEEE 34th International Conference on Microelectronic Test Structures, pp.1-4. 14 April 2022.

Meher, Nilakantha, Bhattacharya, M., and Jha, Anand 2022, Direct measurement of atomic entanglement via cavity photon statistics, eprint arXiv:2204.03891v1. 08 April 2022

2021

Yang, Zixin, Simon, Richard, Li, Yangming, and Linte, Cristian A. 2021, Dense Depth Estimation from Stereo Endoscopy Videos Using Unsupervised Optical Flow Methods, Medical Image Understanding and Analysis. MIUA 2021. Lecture Notes in Computer Science, vol 12722, 6 July 2021.

Hasan, Nazmul M. D., Zheng, Yixiong, Lai, Junyu, Mohseni, Parsian K., Seo, Jung-Hun, et al. 2021, Electrical and Thermal Property of Si/GaAs Heterojunction Formed by Ultra-Thin Oxide Interfacial Layer, arXiv, eprint arXiv:2107.06983, 01 July 2021

Sun, G., Chang, T. C., Uzgil, B. D., Bock, J. J., Bradford, C. M., Butler, V., Caze-Cortes, T., Cheng, Y. T., Cooray, A. 2021, Probing Cosmic Reionization and Molecular Gas Growth with TIME, The Astrophysical Journal, Volume 915, Number 1, 01 July 2021.

Swain, Biswa R., Dorrer, Christophe, and Qiao, Jie 2021, Telephoto-Based Optical Differentiation Wavefront Sensor and Alignment Tolerance for Freeform Metrology, Optical Society of America, Optical Fabrication and Testing, Pages OM3B. 4, 27 June 2021.

Birrittella, Richard J., Ziskind, Jason, Hach, Edwin E., Alsing, Paul M., and Gerry, Christopher C. 2021, Optimal spin- and planar-quantum squeezing in superpositions of spin coherent states, eprint arXiv:2106.04430. 25 June 2021

2020

Jalalahmadi, Golnaz, Helguera, María., and Linte, Cristian A. 2020, A machine learning approach for abdominal aortic aneurysm severity assessment using geometric, biomechanical, and patient-specific historical clinical features, Society of Photo-Optical Instrumentation Engineers (SPIE) Conference Series, 11317, 1131713, 28 February 2020.

Liu, Dawei, Dangi, Shusil, Schwarz, Karl Q., and Linte, Cristian A. 2020, Combining statistical shape model and principal component analysis to estimate left ventricular volume and ejection fraction, Society of Photo-Optical Instrumentation Engineers (SPIE) Conference Series, 11319, 113190E, 16 March 2020.

Neim, Lilian, Smith, Bruce W., and Fenger, Germain 2020, EUV mask polarization effects on sub-7nm node imaging, Society of Photo-Optical Instrumentation Engineers (SPIE) Conference Series, 11323, 1132314, 23 March 2020.

Račiukaitis, Gediminas, Molpeceres, Carlos, Qiao, Jie, and Narazaki, Aiko, 2020, Laser Applications in Microelectronic and Optoelectronic Manufacturing (LAMOM) XXV, Society of Photo-Optical Instrumentation Engineers (SPIE) Conference Series, 11267.

Starling, David J., Poirier, Jacob, Fanto, Michael, Steidle, Jeffrey A., Tison, Christopher C., Howland, Gregory A., and Preble, Stefan F., 2020, Nonlinear Photon Pair Generation in a Highly Dispersive Medium, Physical Review Applied, 13, 041005, 29 April 2020.

2019

Arteaga-Sierra, F. R., Feng, T., Dorrer, C. and Qiao, J., 2019, Nonlinear Optical Dynamics in Femtosecond Laser Processing of Nd:YAG Waveguides 2019 Conference on Lasers and Electro-Optics Europe & European Quantum Electronics Conference, pp. 1-1, 10.1109, 17 October 2019.

Beichman, C., Zemcov, M. B., Lisse, C. M., Bock, J. A., Brandt, P. C., Horanyi, M., McNutt, R. L., Poppe, A. R., Paul, M. V., Sterken, V. J., and Szalay, J. R., 2019, Measuring the Extragalactic Background Light With an Interstellar Probe, AGU Fall Meeting Abstracts, 2019, SH54A-10, December 2019.

Burns, E., and 1163 colleagues, 2019, A Fermi Gamma-Ray Burst Monitor Search for Electromagnetic Signals Coincident with Gravitational-wave Candidates in Advanced LIGO's First Observing Run, The Astrophysical Journal, 871, 90, 24 January 2019.

Chang, Tzu-Ching, Zemcov, Michael, and 42 colleagues 2019, Tomography of the Cosmic Dawn and Reionization Eras with Multiple Tracers, Bulletin of the American Astronomical Society, 51, 282, 28 Mar 2019.

Mroczkowski, Tony, Zemcov, Michael and 34 colleagues, 2019, A High-resolution SZ View of the Warm-Hot Universe, Bulletin of the American Astronomical Society, 51, 124, May 2019.