Publications

2025

Chichester, C. C., Yamakuchi, M.,Takenouchi, K., Hashiguchi, T., and Maywar, D. N. 2025, Analytical Basal-State Model of the Glucose, Insulin, and C-Peptide Systems for Type 2 Diabetes, MDPI, Bioengineering, 12(5), 553, https://doi.org/10.3390/bioengineering12050553, 21 May 2025.

Khanal, B. 2025, Towards Robust Deep Learning for Medical Imaging With Limited and Noisy Labeled Data, Rochester Institute of Technology ProQuest Dissertations & Theses, Order No. 32038590, Rochester Institute of Technology, NY, USA, 19 May 2025. 

Legault, A., Alexani, E., Castellanos, R., Evans, C. Figer, D. F., Fullerton, A. W., Garcia, M., Herrero, A., Hillier, D. J., Lennon, D. J., Najarro, P., Negueruela, I., Patrick, L., Puls, J., Rodriguez Del Pino, B., Schoedel, R., and Tramper, F., 2025, Dissecting the Arches cluster: An ideal test bed to study the metal-rich Universe, JWST Proposal. Cycle 4, ID. #7169, 11 March 2025. 

Khanal, B., Pokhrel, S., Bhandari, S., Rana, R., Shrestha, N., Gurung, R. B., Linte, C., Watson, A., Shrestha, Y. R., and Bhattarai B. 2025, Hallucination-Aware Multimodal Benchmark for Gastrointestinal Image Analysis with Large Vision-Language Models, arXiv:2505.07001v1, cs.CV, https://doi.org/10.48550/arXiv.2505.07001, 11 May 2025.

Odden, T. O. B., and Zwickl, B. 2025, How physics students build computational literacy by creating computational literature, Journal of the Learning Sciences, Taylor & Francis Group, LLC​​​​​​​, https://doi.org/10.1080/10508406.2025.2494791, 2 May 2025.

2024

Verostek, M., Miller, C. W. and Zwickl, B. M. 2024, Alleviating the Stress of Finding a PhD Advisor, American Physical Society, Physics Magazine, DOI: 10.1103/Physics.17.76.

Zwickl, Benjamin M., Verostek, Mike, Miller, Casey W. 2024, Modeling when and how physics PhD students search for a research group: the role of interests and prior research experiences in timely group integration, https://arxiv.org/pdf/2404.11580.pdf, 23 April 2024.

Zhang, K., Xiao, K., Luntz-Martin, D., Sun, P., Sharma, S., Bhattacharya, M., and Vamivakas, A. N. 2024, Coherent control of an optical tweezer phonon laser, Opt. Express, 32, 14735-14745, https://doi.org/10.1364/OE.511600, 8 April 2024.

Kundu, Bipasha, Yang, Zixin, Simon, Richard, and Linte, Cristian 2024, Comparative analysis of non-rigid registration techniques for liver surface registration, Proc. SPIE 12928, Medical Imaging 2024: Image-Guided Procedures, Robotic Interventions, and Modeling, 129282B, https://doi.org/10.1117/12.3008594, 29 March 2024.

Silich, E. M., Bellomi, E., Sayers, J., ZuHone, J., Chadayammuri, U., Golwala, S., Hughes, D., Montaña, A., Mroczkowski, T., Nagai, D., Sánchez, D., Stanford, S. A., Wilson, G., Zemcov, M., and Zitrin, A. 2024, Improved Constraints on Mergers with SZ, Hydrodynamical simulations, Optical, and X-ray (ICM-SHOX), Paper II: Galaxy cluster sample overview, EPJ Web of Conferences 293, EDP Sciences, https://doi.org/10.1051/epjconf/202429300050, 28 March 2024.

2023

Khanal, B., Bhattarai, B., Khanal, B., Stoyanov, D., and Linte, C. A. 2023, M-VAAL: Multimodal Variational Adversarial Active Learning for Downstream Medical Image Analysis Tasks, arXiv:2306.12376v1, 21 Jun 2023.

Polly, Stephen, Bogner, Brandon, Fedorenko, Anastasiia, Phokharel, Nikhil, Ahrenkiel, Phil, Chowdhury, Subhra, Biswas, Dhrubes, Hubbard, Seth 2023, Growth optimization of quantum-well-enhanced multijunction photovoltaics, Cell Reports Physical Science 4, 101432. 21 June 2023

Upendra, Roshan R., Simon, Richard, Shontz, Suzanne M., and Linte, Cristian A. 2023, Deformable Image Registration Using Vision Transformers for Cardiac Motion Estimation from Cine Cardiac MRI Images, International Conference on Functional Imaging and Modeling of the Heart, 16 June 2023.

Pradhan, Nalinikanta, Kumar, Pardeep, Kanamoto, Rina, Dey, Tarak N., Bhattacharya, M., and Mishra, Pankaj K. 2023, Cavity optomechanical detection of persistent currents and solitons in a bosonic ring condensate, arXiv:2306.06720v1, 11 June 2023.

Mainali, Madan K., Subedi, Indra, Forbes, David V., Hubbard, Seth M., and Poddrazam, Nikolas J. 2023, Optical and electronic transport properties of epitaxial InGaAs and InAlAs in multilayer stacks, Journal of Materials Science, Springer US, Pages 1-14. 07 June 2023

2022

Kabir, Muhammad Salahuddin, Powell, Eli, Manley, Robert G., and Hirschman, Karl D. 2022, Intrinsic Channel Mobility Associated with Extended State transport in IGZO TFTs,ECS Transactions, Volume 109, Number 6. 30 September 2022

Harris, Jerry D., Wade, Emily A., Elison, Emmaline G., Pena, Cecelia C., Hubbard, Seth M., et al. 2022, Zinc-Acetate-Amine Complexes as Precursors to ZnO and the Effect of the Amine on Nanoparticle Morphology, Size, and Photocatalytic Activity, MDPI, Structured Semiconductors in Photocatalysis, Volume 12, Issue 10, Pages: 1099. 23 September 2022.

Verostek, Michael, Griston, Molly, Botello, Jesus, and Zwickl, Benjamin M. 2022, Making expert cognitive processes visible: planning and preliminary analysis in theoretical physics research, Physics Education Research Conference NSF: 10409048. 22 September 2022

Flores, Mark, Verchimak, Rebecca, Zohrabi Alaee, Dina, and Zwickl, Benjamin M. 2022, Factors influencing help seeking and help avoidant behaviors among physics and life science majors, Physics Education Research Conference, NSF: 1049047. 22 September 2022

Polly, Stephen, Bogner, Brandon, Fedorenko, Anastasiia, Pokharel, Nikhil, and Hubbard, Seth M. 2022, Growth Optimization of InGaP/GaAs Dual Junction Solar Cells With Quantum Wells and a Distributed Bragg Reflector, Cell Reports Physical Science. 14 September 2022

2021

Prajapati, H. S., Merchant-Borna, K., Bazarian, J. J., Linte, C. A., and Cahill, N. D. 2021, Transitive Inverse Consistent Rigid Longitudinal Registration of Diffusion Weighted Magnetic Resonance Imaging: A Case Study in Athletes With Repetitive Non-Concussive Head Injuries, 43rd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), pp. 3906-3911. 01 November 2021

Butler, Victoria, Feder, Richard M., Daylan, Tansu, Mantz, Adam B., Mercado, Dale, Montana, Alfredo, Portillo, Stephen K. N., Sayers, Jack, Vaughan, Benjamin J., Zemcov, Michael, and Zitrin, Adi 2021, Measurement of the Relativistic Sunyaev-Zeldovich Corrections in RX J1347.5-1145, eprint arXiv:2110.13932, 26 Oct 2021.

Schneeloch, James, Birrittella, Richard J., Tison, Christopher C., Howland, Gregory A., Fanto, Michael L., and Alsing, Paul M. 2021, Quantifying Tripartite Spatial and Energy-Time Entanglement in Nonlinear Optics, eprint arXiv:2110.06781, 13 Oct 2021.

Linte, Cristian A., Dou, Qi, Luo, Xiongbiao, McLeod, Jonathan, Sarikaya, Duygu, et al. 2021, Special issue on 2020 augmented environments for computer-assisted interventions (AE-CAI): guest editors’ foreword, Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, 9:3, 217-218, DOI: 10.1080/21681163.2020.1838330. 13 October 2021

Cheng, Yun-Ting, Nguyen, Chi H., Sano, Kei, Tsumura, Kohji, Zemcov, Michael, et al. 2021, Probing Intra-Halo Light with Galaxy Stacking in CIBER Images 2021, eprint arXiv:2103.03882, 13 October 2021.

2020

Lisse, C., Zemcov, M., Poppe, A., Szalay, J., Draine, B., Horanyi, M., ... and Paul, M. 2020, What Science Can an Interstellar Probe Mission at Large Heliocentric Distances Achieve With Remote Imaging and In Situ Dust Measurements?. In European Planetary Science Congress (pp. EPSC2020-845).

Sun, Zheng, Xu, Ke, Beaumariage, Jonathan, Liang, Jierui, Fullerton-Shirey, Susan, Snoke, David Wayne, 2020 "Optical Switching Based on a Single Layer of WSe2 " American Physical Society, Volume 65, Number 1

Subramanian, Shruti, Wang, Yuanxi, Moser, Simon, Simonson, Nicholas A., Deng, Donna, Crespi, Vincent H., Fullerton-Shirley, Susan K., Robinson, Joshua A., 2020 "Tuning transport across MoSs/graphene interfaces via as-grown lateral heterostructures" npj 2D Materials and Applications, Volume 4, Article 9

Liang, Jierui, Xu, Ke, Arora, Swati, Lasser, Jennifer E., Fullerton-Shirey, Susan K., 2020 "Ion-Locking in Solid Polymer Electrolytes for Reconfigurable Gateless Lateral Graphene p-n Junctions" Materials, 13(5): 1089

Jalalahmadi, Golnaz, Helguera, Maria, Linte, Cristian A., 2020 "A machine leaning approach for abdominal aortic aneurysm severity assessment using geometric, biomechanical, and patient-specific historical clinical features" SPIE Medical Imaging, 2020, Houston, Texas, United States

2019

Neim, Lilian and Smith, Bruce W., 2019, EUV mask polarization effects, International Conference on Extreme Ultraviolet Lithography 2019, 11147, 111470O, 26 September 2019.

Oram, Kathleen, Vorobiev, Dmitry, Ninkov, Zoran, Irwin, Alexis, Pellish, Jonathan A., Carts, Martin, and Brown, Stephen K., 2019, The effects of gamma radiation on digital micromirror devices, Emerging Digital Micromirror Device Based Systems and Applications XI, 10932, 109320V, 4 March 2019.

Poppe, A. R., Lisse, C. M., Piquette, M., Zemcov, M., Horányi, M., James, D., Szalay, J. R., Bernardoni, E., and Stern, S. A., 2019, Constraining the Solar System's Debris Disk with In Situ New Horizons Measurements from the Edgeworth-Kuiper Belt, The Astrophysical Journal, 881, L12, August 2019.

Saini, Sajan, Preble, Stefan, Popović, Miloš, Cardenas, Jaime, Kost, Alan, Verlage, Erik, Howland, Gregory, and Kimerling, Lionel C., 2019, Integrated photonics and application-specific design on a massive open online course platform, Fifteenth Conference on Education and Training in Optics and Photonics: ETOP 2019, 11143, 111430Y, 2 July 2019.

Scott, Ryan E., Alsing, Paul M., Smith, A. Matthew, Fanto, Michael L., Tison, Christopher C., Schneeloch, James, and Hach, Edwin E., 2019, Scalable controlled-uc(not) gate for linear optical quantum computing using microring resonators, Physical Review A, 100, 022322, 19 August 2019.