Research Lab

Dr André Hudson
Department Head
Thomas H. Gosnell School of Life Sciences
585-475-4259
Profile

Dr. Renata Rezende Miranda
Post Doctoral Researcher
Thomas H. Gosnell School of Life Sciences
Profile

The Hudson Lab trains the next generation of scientists to solve today's problems and prepares them for future and emerging scientific issues.  Dedicated to addressing the problem of antibiotic resistance, Dr. André O. Hudson and his group focus their research on the identification and characterization of novel antibiotic lead compounds.  They use techniques and approaches from biochemistry, molecular biology, bioinformatics, genomics, and microbiology.  In addition, the lab has ongoing projects addressing various aspects of amino acid metabolism and microbial genomics.

 

Dr. Ke Xu
Assistant Professor
School of Astronomy and Physics
585-475-6172
Profile

Dr. Xu is an Assistant Professor in the School of Physics and Astronomy and in Microsystems Engineering at RIT.  His group works on two-dimensional (2D) materials, an emerging category of material that is molecularly thin (such as graphene), and has shown great potential for future high-speed energy-efficient electronic and optoelectronic devices.  Currently, he and his students focus on understanding ion-electron transport at the molecular level, and their goal is to utilize their new finding to develop next-generation devices for artificial synapses, neuromorphic computing, and hardware security.

In his lab, the students will have the opportunity to learn the state-of-the-art electronic device fabrication and characterization techniques, as well as utilizing finite element modeling to simulate and optimize device performance.  For example, students can get trained on using the Atomic Force Microscope (AFM) to identify and characterize 2D materials, and measuring their electrical properties in the cryogenic vacuum probe station.

His research is highly multidisciplinary and welcomes students from any related majors who have an interest and curiosity in Physics, Electronics, or Ionics.

 

Dr. Lishibanya Mohapatra
Assistant Professor
School of Physics and Astronomy
585-475-5128
Profile

Dr. Mohapatra is focused on using theory and simulations to decipher the design principles used by cells to assemble organelles within them.  Just like human bodies have organs to complete various biological functions, cells have distinguishable subcellular parts called organelles, each specifically designed for its own specialized tasks.  Dr. Mohapatra's lab uses math, physics and computation to study how cells measure and control the size of their organelles.  This research project would be a quatitative study of strategies used by cells to disassemble structures.

 

Dr. Emiliano Brini
Assistant Professor
School of Chemistry and Materials Science
585-475-2287
Profile

Dr. Brini's lab studies the thermodynamic properties of soft matter systems.  Free energy is the driving force of chemical and biochemical processes.  We develop and employ physics based computational tools to estimate it quickly and reliably.  Our main research area focuses on understanding and characterizing protein-protein interactions.  We are also interested in small molecules solvation, and in the preduction of material properties.

 

Dr. Michael Lam
Assistant Professor
School of Physics and Astronomy
585-475-7545
Profile

Dr. Lam works on observations of pulsars, the exotic remnants of high-mass dead stars.  The lab oberves these stars as laboratories for fundamental physics and as probes of the Galazy's interstellar medium.  His work largely connects with the North American Nanohertz Observatory for Gravitational Waves, which uses observations of these pulsars to detect gravitational waves.

 

Dr. Kara Maki
Associate Professor
School of Mathematical Sciences
585-475-2541
Profile

Dr. Maki's research will focus on a phenomenon called the coffee-ring effect.  When coffee spills on a table, after the coffee dries (evaporates) it leaves behind a ring-like pattern (a particle deposition pattern).  This pattern is called the coffee-ring effect (https://en.wikipedia.org/wiki/Coffee_ring_effect).  Professor Schertzer's research group (https://www.rit.edu/directory/mjseme-michael-schertzer) conducts experiments where drops of water mixed with particles are dried at room temperature on different kids of surfaces.  They find interesting deposition patterns left behind when a droplet of water containing micron-sized particles is evaporated on heterogeneous surfaces (a surface with printed patterns).  They hypothesize that the printed patterns cause local differences in the movement of the edge of the droplet.  In this research project we explore this hypothesis by approximating a system of equations characterizing the flow of the liquid/particles in the drop as it evaporates.

 

Dr. Shahla Nasserasr
Assistant Professor
School of Mathematical Sciences
585-475-5150
Profile

Dr. Nasserasr works in the School of Mathematical Sciences.  The project for this summer will involve patterns of matricies and their structures.  We will look at matrices when some of the entries are not known, and look for cases when unknown entries can be filled with values so that the matrix has a desired property.

 

Dr. Lucia Carichino
Assistant Professor
School of Mathematical Sciences
(585) 475-2537
lcsma1@rit.edu
Profile

Dr. Lucia Carichino is an Assistant Professor in the School of Mathematical Sciences at RIT, with a specialty in Mathematical Biology. The focus of her research is on mathematical and computational models of multiscale biological systems. Her work is motivated by the need for new tools to interpret experimental data in biology and medicine. Her group develops models of ocular dynamics and mico-swimmers locomotion. In the eye, her group studies how ocular diseases are related to vascular and structural changes, and study the interaction between contact lenses, tear film and the deformable eye. In relation to mico-swimmers, her group studies hydrodynamic and biochemical interactions in sperm motility. To learn more about her research visit: https://sites.google.com/site/lcarichino/.

 

Dr. Eli J. Borrego
Assistant Professor
Thomas H. Gosnell School of Life Sciences
585-475-2184
Profile

Dr. Eli Borrego is an Assistant Professor in the Thomas H. Gosnell School of Life Sciences. He explores the role of a group of hormone-like lipid signals, known as oxylipins, in plants. These molecules have revolutionized medicine, where nearly 80% of drugs target pathways under oxylipin control, but outside of mammals little is known regarding their biosynthesis, function, or signaling. The Borrego research group combines genetic, molecular, and biochemical tools with transcriptomic, lipidomic, and metabolomic technologies to answer oxylipin-related questions in biology, biochemistry, plant pathology, entomology, and mycology. The groups emphasis is to elucidate oxylipins in agro-economically relevant processes of crops, such as during defense against pathogens and insects, tolerance during drought, and heavy metal accumulation.  In addition to the molecular biology and biochemistry laboratory component, this work utilizes field and greenhouse spaces.

Dr. Eli J. Borrego
Assistant Professor
Thomas H. Gosnell School of Life Sciences
585-475-2184
Profile

Dr. Eli Borrego is an Assistant Professor in the Thomas H. Gosnell School of Life Sciences. He explores the role of a group of hormone-like lipid signals, known as oxylipins, in plants. These molecules have revolutionized medicine, where nearly 80% of drugs target pathways under oxylipin control, but outside of mammals little is known regarding their biosynthesis, function, or signaling. The Borrego research group combines genetic, molecular, and biochemical tools with transcriptomic, lipidomic, and metabolomic technologies to answer oxylipin-related questions in biology, biochemistry, plant pathology, entomology, and mycology. The groups emphasis is to elucidate oxylipins in agro-economically relevant processes of crops, such as during defense against pathogens and insects, tolerance during drought, and heavy metal accumulation.  In addition to the molecular biology and biochemistry laboratory component, this work utilizes field and greenhouse spaces.

 

Dr. Lucia Carichino
Assistant Professor
School of Mathematical Sciences
(585) 475-2537
lcsma1@rit.edu
Profile

Dr. Lucia Carichino is an Assistant Professor in the School of Mathematical Sciences at RIT, with a specialty in Mathematical Biology. The focus of her research is on mathematical and computational models of multiscale biological systems. Her work is motivated by the need for new tools to interpret experimental data in biology and medicine. Her group develops models of ocular dynamics and mico-swimmers locomotion. In the eye, her group studies how ocular diseases are related to vascular and structural changes, and study the interaction between contact lenses, tear film and the deformable eye. In relation to mico-swimmers, her group studies hydrodynamic and biochemical interactions in sperm motility. To learn more about her research visit: https://sites.google.com/site/lcarichino/.

 

Dr. Micheal Coleman
Associate Professor
School of Chemistry and Materials Science
(585) 475-5108
Profile

Dr. Michael Coleman is an Associate Professor of Chemistry. His research groups interests are focused on the development of Earth-abundant transition metal complexes and innovative chemical transformations for the selective catalytic cleavage and formation of C-H, C-C, C-O, and C-N bonds from readily available organic starting materials. Special emphasis is placed on sp2-hybridized prochiral centers because of the mechanistic insights gained from the chemo-, regio-, and stereochemical outcomes.

 

Dr. Pratik Dholabhai
Assistant Professor
School of Physics and Astronomy
(585) 475-4178
ppdsps@rit.edu
Profile

Dr. Pratik Dholabhai is a computational materials scientist whose expertise is in the application of atomistic simulation methods such as density functional theory and molecular dynamics, and the development of kinetic Monte Carlo methods to study and design materials at the nanoscale. His research focuses on integrating fundamental physics, materials science, and chemistry in conjunction with state-of-the-art computational tools to study and design materials with novel functionalities. At RIT, Pratik leads the Multiscale Materials Modeling and Design (MMMD) group, which uses atomistic simulation methods to study materials at various length and time scales. Group Website

 

Dr. Elena Fedorovskaya
Research Faculty
Integrated Sciences Academy
(585) 475-6952
eafppr@rit.edu
Profile

Dr. Elena Fedorovskaya is a Research Professor in the Integrated Sciences Academy. Elena studies how we perceive and respond to images, from simple color patches to complex scenes and visual art, using methods of psychophysics, eye tracking, and electrophysiology. Do we pay attention to some colors more than others? How do sounds affect our perception of colors and their salience? Does expertise and training matter when we view art? And can we differentiate patterns of eye movements of expert and novices using machine learning? These are some of the questions Elena is addressing in her research.

 

Dr. Maureen Ferran
Associate Professor
Thomas H. Gosnell School of Life Sciences
585-475-5689
mcfsbi@rit.edu
Profile

Dr. Maureen Ferran is an associate professor in the Thomas H. Gosnell School of Life Sciences. One aspect of research in the Ferran lab focuses on how two different mammalian viruses evade the host immune response and the development of viruses as a cancer therapy that specifically kill cancer cells while leaving healthy tissue alone. This work requires virus work, molecular biology, and tissue cell culture techniques. The lab is also involved in a collaborative project with Dr. Hans Schmitthenner in the School of Chemistry and Material Sciences. Dr. Hams synthesizes Molecularly Targeted Imaging Agents (MTIA) and we test them to determine if these imaging agents are able to detection and treat of breast cancer. This project also involves standard techniques in molecular biology and tissue cell culture.

 

Dr. Gregory Howland
Assistant Professor
School of Physics and Astronomy
gaheen@rit.edu
Profile

Dr. Gregory Howland is an Assistant Professor in the School of Physics and Astronomy. The Howland lab experimentally explores Quantum Photonic Technologies. Quantum Photonics exploits the peculiar and non-intuitive properties of single photons---elementary particles of light---to realize transformative applications including exquisitely precise sensing, extreme low-light imaging, unconditionally secure communication, and exponentially faster computing. It is an exciting time to work in quantum technologies as the field has reached an inflection point where practical devices are starting to leave the laboratory and become useful.  One powerful new tool the Howland lab uses are integrated photonic circuits that can pack thousands of optical elements onto a tiny silicon chip. Activities in the lab range from the very fundamental, such as characterizing quantum entanglement, to the very applied, such as taking a picture with only a few photons.

 

Dr. Massoud (Matt) J. MIri
Associate Professor
School of Chemistry and Materials Science
(585) 475-6004
mjmsch@rit.edu
Profile

Dr. Massoud (Matt) Miri is an Associate Professor in the School of Chemistry and Materials Science and his main research area is Polymer Chemistry.  His research focuses on the synthesis and development of more sustainable polymers, mainly plastics.  To resolve the issues with fossil fuels, currently used as starting materials for plastics, his group applies renewable resources, which are mostly compounds found in plants, e.g. lignin derivatives.  Some of these renewable materials can be directly used as the building blocks, i.e. monomers, for polymerizations.  His group also applies chemical reactions to convert renewable materials into useful monomers.  They also characterize key properties of the synthesized polymers to evaluate their effectiveness for target applications.  To reduce environmental issues arising from polymer waste, such as increasing landfills or marine pollution, his group investigates the degradation of polymers, simulating conditions in a compost or aqueous environment.  There are many advantages of synthesizing new sustainable polymers over just blending fossil fuel based polymers with renewable compounds, such as starch or plant oils.  The chemical bonding can result in more uniform and longer lasting, thermal and mechanical properties than those obtained from the polymer blends.

 

Dr. Shima Parsa Moghaddam
Assistant Professor
School of Physics and Astronomy
(585) 475-2534
shima.parsa@rit.edu
Profile

Dr. Shima Parsa, assistant professor of Physics at RIT, is an experimental Physicist with a passion for water and environmental issues. She uses microfluidics to simulate environmental phenomena such as water infiltration, in lab. Her research focuses on the microscale dynamics of fluids within the pores of rocks with application in groundwater remediation. In particular, she studies the dispersion of organic contaminant by analyzing the dynamics of emulsion droplets in 2D porous media using fluorescent microscopy.

 

Dr. Crista Wadsworth
Assistant Professor
Thomas H. Gosnell School of Life Sciences
(585) 475-7961
cbwsbi@rit.edu
Profile

Dr. Christa Wadsworth is an evolutionary biologist whose research focuses on antimicrobial resistance in bacteria. Resistance is one of the greatest and most critical public health crises of our time, raising the specter of untreatable infections and a return to the pre-antibiotic era. Research in the Wadsworth Lab is motivated by nominating new mechanisms of resistance in pathogen species, and characterizing the reservoir of resistance alleles available to pathogens in commensal species and their potential for horizontal transfer. Related topics of interest include microbial speciation, niche specialization, and adaptive evolution. The lab uses a wide array of experimental approaches, combining genomics and wet-lab techniques. 

 

Dr. Tony Wong
Assistant Professor
School of Mathematical Sciences
(585) 475-7486
Profile

Dr. Tony Wong is an Assistant Professor in the School of Mathematical Sciences. Tony's research centers on addressing the implications of the uncertainty that is inherent in all models and data, and examining how best to constrain and characterize these uncertainties and their effects on decision-making. In particular, Tony's work examines how uncertainty in climate model projections, and sea-level rise in particular, can lead to suboptimal, ineffective, and - at worst - outright dangerous policy decisions. This requires accounting for not only varying forms of uncertainty in model parameters and projections, but deep uncertainty - uncertainty in the uncertainty in model structure and parameters. Statistical calibration and sensitivity analysis approaches allow us to constrain these models and characterize the uncertainties inherent in both the model and data, and are a critical part of any modeling effort. Tony's research uses statistical and mathematical modeling tools to evaluate the uncertainties in hazards exacerbated by climate changes, and investigate which geophysical or socioeconomic factors are related to future climate risks, in order to inform strategies to manage those risks.

 

 

 

 

 

Dr. Nathan Eddingsaas
Assistant Professor
School of Chemistry and Materials Science
(585) 475-4605
ncesch@rit.edu
Profile

Nathan Eddingsaas is an Assistant Professor in the School of Chemistry and Materials Science and is an analytical, atmospheric, and environmental chemist. His work focuses on the chemical and physical characterization of aerosols including atmospheric aerosols and aerosols generated from nicotine delivery devices. For atmospheric aerosols his group studies the thermodynamics of phase separation, and how aerosols evolve over time including chemical reactions that occur within aerosols and what happens to semivolatile compounds. For aerosols generated from nicotine delivery devices his group studies how user puffing profiles and product characteristics influence the production of aerosols, and the amount of nicotine, volatile aldehydes, and other harmful or potentially harmful compounds introduced to the user.

Dr. Carrie McCalley
Assistant Professor, Environmental Science
Thomas H. Gosnell School of Life Sciences
(585) 475-6258
ckmsbi@rit.edu
Profile

Carrie McCalley is an Assistant Professor in the Environmental Science Program in the School of Life Sciences. Her work investigates how ecosystem responses to environmental change will impact the atmospheric chemistry of climate. She is particularly interested in the mechanisms underlying methane emission from wetlands; studying the impacts of management and land-use on local wetland habitats and the role of permafrost thaw in changing carbon metabolism in northern peatlands. She is involved in interdisciplinary collaborations that combine molecular, geochemical, remote sensing and modeling approaches to understand feedbacks between human activity and ecosystem function. Dr. McCalley’s research interests are in the following areas: Biogeochemistry, Ecosystem Ecology, Global Change Biology, Biosphere-Atmosphere Interactions, Wetlands, and Isotope Geochemistry.

Dr. Suzanne O'Handley
Associate Professor
School of Chemistry and Materials Science
(585) 475-2741
sfosch@rit.edu
Profile

Our research entails the discovery and characterization of new enzymes. The enzymes either come from model bacteria such as E. coli or pathogenic bacteria such as M. tuberculosis M. leprae, Y. pestis, or Staph. aureus. The enzymes from pathogens are potential novel antibiotic targets. We study members of either the Nudix hydrolase superfamily or the HAD superfamily; in this way we can understand family relationships as well. Students in the lab do bioinformatics to uncover new enzymes, clone the genes, and express, purify, and characterize the proteins. We also do knock-out mutagenesis to determine the role of these enzymes in the cell.

Dr. Michael S. Pierce
Director, MSE Graduate Program
Associate Professor of Physics
School of Physics and Astronomy
(585) 475-2089
mspsps@rit.edu
Profile 

Michael S Pierce, Ph.D. is an Associate Professor in the School of Physics and Astronomy and the Director of the MS Materials Science and Engineering program within the School of Chemistry and Materials Science.  He is an experimental condensed matter physicist, with interests in surfaces & interfaces, nanomaterials, magnetic systems, and more.  The materials studied often have application for energy storage, conversion, or cleaner production through catalysts.  This research is often at the boundary between physics and chemistry, giving students from a variety of backgrounds an opportunity to contribute.  His laboratory maintains an ultra high vacuum surface science instrument, along with a customized
x-ray diffraction hutch.

Dr. John-David R. Rocha
Assistant Professor
School of Chemistry and Materials Science
(585) 475-5150
jrrsch@rit.edu
Profile

As a Postdoctoral Researcher at the National Renewable Energy Laboratory (NREL), Dr. Rocha investigated the hydrogen sorption capacity of novel carbon-based nanomaterials using optical spectroscopic methods, and he also expanded studies of fundamental SWCNT photophysical properties and changes due to refined separation techniques. During his doctoral studies at Rice, he advanced the use of SWCNT fluorescence emission spectroscopy as an analytical characterization method through the design and assembly of a unique real-time fluorimetric analyzer for SWCNTs, now sold commercially as the NanoSpectralyzer (Applied NanoFluorescence, Houston, TX).

Before coming to RIT, Dr. Rocha was a Research Scientist at SouthWest NanoTechnologies (SWeNT, Norman, OK).

Dr. Gary R. Skuse
Professor
Thomas H. Gosnell School of Life Sciences
(585) 475-6725
grssbi@rit.edu
Profile

Gary R. Skuse, Ph.D. is a Professor in the Thomas H. Gosnell School of Life Sciences.  His current research builds upon his long standing interests in human cancer genetics and it is being performed both in vitro and in silico. The wet-laboratory component is looking at the demonstrated ability of a synthetic dye to selectively kill cancer cells while sparing normal cells. His research group is exploring its use as a chemotherapeutic agent in a number of cancer and non-cancer cell lines while developing an effective means of delivering the agent to where it is needed. The computer-based component uses natural language processing software, and a significant amount of human curation, to identify interactions between genes and environmental factors that play a role in the progression to metastasis in ovarian cancer. 

Dr. Julie Thomas
Assistant Professor of BIotechnology
Thomas H. Gosnell School of Life Sciences
jatsbi@rit.edu
(585) 475-2375
Profile

Julie Thomas is an Assistant Professor in the School of Life Sciences. Her research focuses on viruses that infect bacteria (called phages), in particular “giant” phages that have complex virions and long genomes.   Her lab mainly conducts research on a phage that infects the food-borne pathogen, Salmonella enterica.  They study this phage as a model “organism” for related phages that are used for phage therapy and biocontrol purposes. Dr. Thomas is interested in understanding the molecular mechanisms by which this virus infects, replicates within, and ultimately kills the Salmonella cell.  She is particularly interested in understanding virion assembly and determining which virion proteins have roles in host takeover, and their functions. 

Dr. Michael Zemcov
Assistant Professor
School of Physics and Astronomy
(585) 475-2338
Profile

Michael Zemcov is an Assistant Professor in the School of Physics and Astronomy, the Center for Detectors, and the Astrophysical Sciences and Technology program.

His work focuses on measuring the large scale structure of our universe, and understanding its constituents, evolution, and ultimate fate. He is particularly interested in building small-scale experiments devoted to understanding the history of light production and matter in the cosmos. He is involved in a number of large experimental programs, including CIBER, TIME, SPHEREx, and other NASA missions devoted to better understanding our place in the universe.
Dr. Zemcov's research interests are in the following areas: Cosmic Backgrounds, Galaxies and Galaxy Clusters, the History of Star Formation in the Universe, Dark Matter, Technology Development, and Science Education.