Bioinformatics Algorithms will focus on the types of analyses, tools, and databases that are available and commonly used in Bioinformatics. The labs will apply the lecture material in the analysis of real data through computer programming.

Bioinformatics Algorithms will focus on the types of analyses, tools, and databases that are available and commonly used in Bioinformatics. The labs will apply the lecture material in the analysis of real data through computer programming.

This course is a faculty-directed student project or research involving laboratory work, computer modeling, or theoretical calculations that could be considered of an original nature. The level of study is appropriate for students in their first three years of study.

This course is a faculty-directed tutorial of appropriate topics that are not part of the formal curriculum. The level of study is appropriate for student in their first three years of study.

This course allows students to assist in a class or laboratory for which they have previously earned credit. The student will assist the instructor in the operation of the course. Assistance by the student may include fielding questions, helping in workshops, and assisting in review sessions. In the case of labs, students may also be asked to help with supervising safety practices, waste manifestation, and instrumentation.

This course is a faculty-directed student project or research involving laboratory or field work, computer modeling, or theoretical calculations that could be considered of an original nature. The level of study is appropriate for students in their final two years of study.

This course is a faculty-directed tutorial of appropriate topics that are not part of the formal curriculum. The level of study is appropriate for student in their final two years of study.

This course is a faculty-directed, graduate level tutorial of appropriate topics that are not part of the formal curriculum.

Continuation of Thesis

Masters-level research by the candidate on an appropriate topic as arranged between the candidate and the research advisor.

Computer programming in the life sciences is used for modeling and data analysis across all fields. In this course, students will learn the fundamentals of computer programming and apply it to solve real problems in the life sciences. Breaking down problems, common syntax, and thoughtful decisions on proper use of data structures will be emphasized.

Introduction to the principles of inheritance; the study of genes and chromosomes at molecular, cellular, organismal, and population levels.

Students will utilize commonly used bioinformatics tools to analyze a real High Throughput Sequencing data set starting with raw data, proceeding with quality control, either aligning to a reference genome or performing de novo assembly, assessing differential gene expression determination, and finally annotating their results. Weekly lab reports will be required, and a group manuscript is expected at the end of the semester.

Students will utilize commonly used bioinformatics tools to analyze a real High Throughput Sequencing data set starting with raw data, proceeding with quality control, either aligning to a reference genome or performing de novo assembly, assessing differential gene expression determination, and finally annotating their results. Weekly lab reports will be required, and a group manuscript is expected at the end of the semester.

Computer programming in the life sciences is used for modeling and data analysis across all fields. In this course, students will learn more advanced techniques to solve life sciences modeling problems efficiently using parallelization and distributed computing. Common methods and thoughtful decisions on proper use of tools will be emphasized.